RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 DPY19L2P2Q6ZN68 376 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 Q6ZTC4 211 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 MOB3CQ70IA8 216 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 STX12Q86Y82 276 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 ZNF565Q8N9K5 539 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 ZNF511Q8NB15 262 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 OR8B12Q8NGG6 310 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 OR2K2Q8NGT1 345 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 IFT81Q8WYA0 676 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 PRRC1Q96M27 445 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 ERMAPQ96PL5 475 aaPredicted RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 BCL7BQ9BQE9 202 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 POLR2J2Q9GZM3 115 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 POLR2J3Q9H1A7 115 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 PPIL3Q9H2H8 161 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 C11orf68Q9H3H3 251 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 GAL3ST2Q9H3Q3 398 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 EGLN3Q9H6Z9 239 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 ZNF446Q9NWS9 450 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 TAS2R3Q9NYW6 316 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 EXTL2Q9UBQ6 330 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 MRM2Q9UI43 246 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 GAB2Q9UQC2 676 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 FOXA2Q9Y261 457 aaPredicted RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 CHTOPQ9Y3Y2 248 aaKnown RBP3.49□□□□□ -1.85
USP4-209ENST00000475873 NUBP2Q9Y5Y2 271 aa3.49□□□□□ -1.85
USP4-209ENST00000475873 IGKV1-27A0A075B6S5 117 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 TRGV10A0A0A0MS01 117 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 ODAMA1E959 279 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 MGST3O14880 152 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 ARPC1BO15143 372 aaKnown RBP3.48□□□□□ -1.85
USP4-209ENST00000475873 MITFO75030 526 aaPredicted RBP3.48□□□□□ -1.85
USP4-209ENST00000475873 AMBPP02760 352 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 P0DMU3 169 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 FAM231AP0DMU4 169 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 FAM231CP0DMU5 169 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 CALCBP10092 127 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 S100A1P23297 94 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 CD1BP29016 333 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 OPRL1P41146 370 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 PTGFRP43088 359 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 CBX5P45973 191 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 OMPP47874 163 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 TPPP2P59282 170 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 ST3GAL3Q11203 375 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 KPNB1Q14974 876 aaKnown RBP3.48□□□□□ -1.85
USP4-209ENST00000475873 CYP51A1Q16850 503 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 SOHLH1Q5JUK2 328 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 PLCXD3Q63HM9 321 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 ZNF660Q6AZW8 331 aaPredicted RBP3.48□□□□□ -1.85
USP4-209ENST00000475873 MBOAT2Q6ZWT7 520 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 ZNF767PQ75MW2 155 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 TRMT10CQ7L0Y3 403 aaKnown RBP3.48□□□□□ -1.85
USP4-209ENST00000475873 TRPM8Q7Z2W7 1104 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 AKAP14Q86UN6 197 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 ZDHHC13Q8IUH4 622 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 SLC15A3Q8IY34 581 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 OFCC1Q8IZS5 231 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 TMEM61Q8N0U2 210 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 FTMTQ8N4E7 242 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 YIPF7Q8N8F6 280 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 OR4C15Q8NGM1 316 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 TSPEARQ8WU66 669 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 RNF133Q8WVZ7 376 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 RTN4IP1Q8WWV3 396 aaPredicted RBP3.48□□□□□ -1.85
USP4-209ENST00000475873 FRZBQ92765 325 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 PGAM5Q96HS1 289 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 HIST1H2AAQ96QV6 131 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 OR52B2Q96RD2 323 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 CGREF1Q99674 301 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 RNF126Q9BV68 326 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 ANKRD60Q9BZ19 345 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 PARP12Q9H0J9 701 aaKnown RBP3.48□□□□□ -1.85
USP4-209ENST00000475873 OR10A2Q9H208 303 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 RGCCQ9H4X1 137 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 NIPAL2Q9H841 368 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 VIPAS39Q9H9C1 493 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 RANGRFQ9HD47 186 aaPredicted RBP3.48□□□□□ -1.85
USP4-209ENST00000475873 C8orf4Q9NR00 106 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 CNOT2Q9NZN8 540 aaKnown RBP3.48□□□□□ -1.85
USP4-209ENST00000475873 CBY1Q9Y3M2 126 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 AMMECR1Q9Y4X0 333 aaPredicted RBP3.48□□□□□ -1.85
USP4-209ENST00000475873 A3GALT2U3KPV4 340 aa3.48□□□□□ -1.85
USP4-209ENST00000475873 KBTBD11-OT1A0A1B0GTJ5 212 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 SIRPB1O00241 398 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 ZNF593O00488 134 aaPredicted RBP3.47□□□□□ -1.85
USP4-209ENST00000475873 FCN1O00602 326 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 ARPC3O15145 178 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 SLC31A2O15432 143 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 ENTPD6O75354 484 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 OR2A4O95047 310 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 IGLV3-1P01715 115 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 GAPDHP04406 335 aaKnown RBP3.47□□□□□ -1.85
USP4-209ENST00000475873 CLUP10909 449 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 PRKACBP22694 351 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 PPIBP23284 216 aaKnown RBP3.47□□□□□ -1.85
USP4-209ENST00000475873 HLA-DMBP28068 263 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 VBP1P61758 197 aa3.47□□□□□ -1.85
USP4-209ENST00000475873 GRB2P62993 217 aaKnown RBP3.47□□□□□ -1.85
USP4-209ENST00000475873 HAMPP81172 84 aa3.47□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms