RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 KCNIP1Q9NZI2 227 aa11.75□□□□□ -0.53
CCDC88A-211ENST00000471947 MALRD1Q5VYJ5 2156 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 PET100P0DJ07 73 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 NKX2-1P43699 371 aaPredicted RBP11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 SPANXN5Q5MJ07 72 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 ATRAIDQ6UW56 229 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 LGI3Q8N145 548 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 ERGIC1Q969X5 290 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 NAA60Q9H7X0 242 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 TSPAN15O95858 294 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 RUNX1Q01196 453 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 ZNF154Q13106 437 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 OR2F1Q13607 317 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 LRP11Q86VZ4 500 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 STOML3Q8TAV4 291 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 RNF138Q8WVD3 245 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 TAAR6Q96RI8 345 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 TMEM100Q9NV29 134 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 C3orf85A0A1B0GTC6 90 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 TTLL8A6PVC2 850 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 DNPH1O43598 174 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 OR13C7P0DN81 318 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 UCP2P55851 309 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 PSG7Q13046 419 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 OR8B8Q15620 311 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 ZNF818PQ6ZRF7 136 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 SCCPDHQ8NBX0 429 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 ABHD14BQ96IU4 210 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 LOXL4Q96JB6 756 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 PRRX2Q99811 253 aa11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 REPIN1Q9BWE0 567 aaKnown RBP11.74□□□□□ -0.53
CCDC88A-211ENST00000471947 CCL1P22362 96 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 OTX1P32242 354 aaPredicted RBP11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 PPP1CCP36873 323 aaKnown RBP11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 CEACAM21Q3KPI0 293 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 ZFP82Q8N141 532 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 KLF14Q8TD94 323 aaPredicted RBP11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 FGF23Q9GZV9 251 aaPredicted RBP11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 AMDHD2Q9Y303 409 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 TNCP24821 2201 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 ST8SIA3O43173 380 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 ACTL6AO96019 429 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 DAOP14920 347 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 ELLP55199 621 aaPredicted RBP11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 CCL8P80075 99 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 SRSF3P84103 164 aaKnown RBP11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 OR52L2PQ8NGH6 319 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 ADAMTS17Q8TE56 1095 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 SDSLQ96GA7 329 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 RGCCQ9H4X1 137 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 OSGIN2Q9Y236 505 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 HMSDA8MTL9 139 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 GPR37O15354 613 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 TXNL1O43396 289 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 SNRNP70P08621 437 aaKnown RBP11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 FAM87AP0C7U9 286 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 PSG2P11465 335 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 PVALBP20472 110 aaPredicted RBP11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 ZNF528Q3MIS6 628 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 VAX1Q5SQQ9 334 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 GPR157Q5UAW9 335 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 FIP1L1Q6UN15 594 aaKnown RBP11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 LRRC29Q8WV35 223 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 ARL11Q969Q4 196 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 RNF126Q9BV68 326 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 ALX4Q9H161 411 aaPredicted RBP11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 NPTNQ9Y639 398 aa11.73□□□□□ -0.53
CCDC88A-211ENST00000471947 PLXNB1O43157 2135 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 TLN2Q9Y4G6 2542 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 OR2H2O95918 312 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 SELLP14151 372 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 CBR1P16152 277 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 TBPP20226 339 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 NHLRC3Q5JS37 347 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 OR1L1Q8NH94 360 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 SH3BGRL3Q9H299 93 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 FANCFQ9NPI8 374 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 ATP6V1G2-DDX39BF2Z307 99 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 CLDN1O95832 211 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 CRYAAP02489 173 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 TCTEX1D2Q8WW35 142 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 DLL3Q9NYJ7 618 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 TRGV8A0A0C4DH27 118 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 OR5H1A6NKK0 313 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 MBPP02686 304 aaPredicted RBP11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 HAGHQ16775 308 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 FAM209AQ5JX71 171 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 H3F3CQ6NXT2 135 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 LPCAT3Q6P1A2 487 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 MOGAT3Q86VF5 341 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 LYPD6Q86Y78 171 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 MDS2Q8NDY4 140 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 C1QTNF5Q9BXJ0 243 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 PSG11Q9UQ72 335 aa11.72□□□□□ -0.53
CCDC88A-211ENST00000471947 MPPED1O15442 326 aa11.71□□□□□ -0.53
CCDC88A-211ENST00000471947 METTL15P1P0C7V9 234 aa11.71□□□□□ -0.53
CCDC88A-211ENST00000471947 RASL12Q9NYN1 266 aa11.71□□□□□ -0.53
CCDC88A-211ENST00000471947 PTPN13Q12923 2485 aa11.71□□□□□ -0.53
CCDC88A-211ENST00000471947 CECR9P0C854 216 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms