RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 FAM90A14PP0C7W9 464 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 FAM90A24PP0C7X0 464 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 IGFBP3P17936 291 aaPredicted RBP12.99□□□□□ -0.33
COL9A3-208ENST00000469802 NFYBP25208 207 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 C21orf33P30042 268 aaPredicted RBP12.99□□□□□ -0.33
COL9A3-208ENST00000469802 SSTR5P35346 364 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 ZNF93P35789 620 aaPredicted RBP12.99□□□□□ -0.33
COL9A3-208ENST00000469802 RPS11P62280 158 aaKnown RBP eCLIP12.99□□□□□ -0.33
COL9A3-208ENST00000469802 PPP3R1P63098 170 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 RBM39Q14498 530 aaKnown RBP12.99□□□□□ -0.33
COL9A3-208ENST00000469802 ABCA11PQ4W5N1 156 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 DDI2Q5TDH0 399 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 DMKNQ6E0U4 476 aaPredicted RBP12.99□□□□□ -0.33
COL9A3-208ENST00000469802 SUMF2Q8NBJ7 301 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 OR5AU1Q8NGC0 362 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 OR52N1Q8NH53 320 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 STMN2Q93045 179 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 PGLYRP3Q96LB9 341 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 DPCDQ9BVM2 203 aaPredicted RBP12.99□□□□□ -0.33
COL9A3-208ENST00000469802 PCDHB16Q9NRJ7 776 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 BABAM2Q9NXR7 383 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 IDI2-AS1Q9NZ38 188 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.99□□□□□ -0.33
COL9A3-208ENST00000469802 CLEC2DQ9UHP7 191 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 ST3GAL6Q9Y274 331 aa12.99□□□□□ -0.33
COL9A3-208ENST00000469802 AMMECR1Q9Y4X0 333 aaPredicted RBP12.99□□□□□ -0.33
COL9A3-208ENST00000469802 MAGEA13PA6NCF6 341 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 M0QZK8 103 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 GPX5O75715 221 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 HTR3BO95264 441 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 MYL12AP19105 171 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 BDKRB2P30411 391 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 MNDAP41218 407 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 ADARB1P78563 741 aaKnown RBP12.98□□□□□ -0.33
COL9A3-208ENST00000469802 LINC00596Q86U02 117 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 OSR2Q8N2R0 312 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 PACRGLQ8N7B6 248 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 OR10A7Q8NGE5 316 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 MRGPRDQ8TDS7 321 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 TOMM40LQ969M1 308 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 ORAI1Q96D31 301 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 C8orf4Q9NR00 106 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 PSG11Q9UQ72 335 aa12.98□□□□□ -0.33
COL9A3-208ENST00000469802 GEMIN2O14893 280 aaKnown RBP12.97□□□□□ -0.33
COL9A3-208ENST00000469802 LPLP06858 475 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 FSTP19883 344 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 RIPK1Q13546 671 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 MPV17LQ2QL34 196 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 Q499Y3 187 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 YIF1BQ5BJH7 314 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 OXLD1Q5BKU9 147 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 TTC23Q5W5X9 447 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 SLC16A12Q6ZSM3 486 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 THNSL2Q86YJ6 484 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 SETD9Q8NE22 299 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 CAPSLQ8WWF8 208 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 CYGBQ8WWM9 190 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 GHSRQ92847 366 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 LEAP2Q969E1 77 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 RPEQ96AT9 228 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 TMEM80Q96HE8 168 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 ZNF184Q99676 751 aaPredicted RBP12.97□□□□□ -0.33
COL9A3-208ENST00000469802 METTL9Q9H1A3 318 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 MOB4Q9Y3A3 225 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 HSPE1-MOB4S4R3N1 261 aa12.97□□□□□ -0.33
COL9A3-208ENST00000469802 TRAV8-7A0A075B6U6 113 aa12.96□□□□□ -0.33
COL9A3-208ENST00000469802 TRBV5-7A0A0A0MS05 114 aa12.96□□□□□ -0.33
COL9A3-208ENST00000469802 SH2D7A6NKC9 451 aaPredicted RBP12.96□□□□□ -0.33
COL9A3-208ENST00000469802 OR7C1O76099 320 aaPredicted RBP12.96□□□□□ -0.33
COL9A3-208ENST00000469802 IGHV3-7P01780 117 aa12.96□□□□□ -0.33
COL9A3-208ENST00000469802 SERPINA2P20848 420 aa12.96□□□□□ -0.33
COL9A3-208ENST00000469802 MADCAM1Q13477 382 aa12.96□□□□□ -0.33
COL9A3-208ENST00000469802 DIAPH2-AS1Q14236 149 aa12.96□□□□□ -0.33
COL9A3-208ENST00000469802 LRRC36Q1X8D7 754 aa12.96□□□□□ -0.33
COL9A3-208ENST00000469802 REC114Q7Z4M0 266 aa12.96□□□□□ -0.33
COL9A3-208ENST00000469802 OR56B4Q8NH76 319 aa12.96□□□□□ -0.33
COL9A3-208ENST00000469802 RFESDQ8TAC1 157 aa12.96□□□□□ -0.33
COL9A3-208ENST00000469802 PAK1IP1Q9NWT1 392 aaPredicted RBP12.96□□□□□ -0.33
COL9A3-208ENST00000469802 TRAV39A0A0B4J263 110 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 A0A1W2PP11 408 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 TMEM30CPA0ZSE6 113 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 C15orf65H3BRN8 121 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 ZNF780AO75290 641 aaPredicted RBP12.95□□□□□ -0.34
COL9A3-208ENST00000469802 CSTBP04080 98 aaKnown RBP12.95□□□□□ -0.34
COL9A3-208ENST00000469802 SNRNP70P08621 437 aaKnown RBP12.95□□□□□ -0.34
COL9A3-208ENST00000469802 FAM106CPP0CH98 169 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 RAB7AP51149 207 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 LAIR2Q6ISS4 152 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 C10orf99Q6UWK7 81 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 Q6ZPA2 131 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 OR8H3Q8N146 312 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 DRAM1Q8N682 238 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 ZFP41Q8N8Y5 198 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 WFDC9Q8NEX5 89 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 FBLIM1Q8WUP2 373 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 GGHQ92820 318 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 MYDGFQ969H8 173 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 RCC2Q9P258 522 aaKnown RBP12.95□□□□□ -0.34
COL9A3-208ENST00000469802 ING4Q9UNL4 249 aa12.95□□□□□ -0.34
COL9A3-208ENST00000469802 TSSC4Q9Y5U2 329 aaPredicted RBP12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms