RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 RPS27AP62979 156 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 OC90Q02509 493 aaPredicted RBP4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 CFHR3Q02985 330 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 PPP1R1AQ13522 171 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 TRIP11Q15643 1979 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 C2orf68Q2NKX9 166 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 TDRG1Q3Y452 100 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 ALG10BQ5I7T1 473 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 GLT8D1Q68CQ7 371 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 C12orf54Q6X4T0 127 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 GTF2H5Q6ZYL4 71 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 MEPCEQ7L2J0 689 aaKnown RBP4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 TMPRSS11BQ86T26 416 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 ZNF547Q8IVP9 402 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 FTMTQ8N4E7 242 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 RELL2Q8NC24 303 aaPredicted RBP4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 DOCK8Q8NF50 2099 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 GJC3Q8NFK1 279 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 OR4C13Q8NGP0 309 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 IL17DQ8TAD2 202 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 FNDC9Q8TBE3 224 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 FBXO25Q8TCJ0 367 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 GGHQ92820 318 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 TSLPQ969D9 159 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 MOB3AQ96BX8 217 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 C1QTNF4Q9BXJ3 329 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 RHOJQ9H4E5 214 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 RNF167Q9H6Y7 350 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 TBC1D17Q9HA65 648 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 A4GALTQ9NPC4 353 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 LHX3Q9UBR4 397 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 FLVCR1Q9Y5Y0 555 aa4.09□□□□□ -1.75
CCDC88A-209ENST00000456975 TRBV9A0A0B4J1U6 114 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 GAGE12JA6NER3 117 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 MS4A18H0YCH9 400 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 J3QR06 171 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 CLDN5O00501 218 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 GAGE7O76087 117 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 CD160O95971 181 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 GAGE12FP0CL80 117 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 GAGE12GP0CL81 117 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 GAGE12IP0CL82 117 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 PGA3P0DJD8 388 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 MGMTP16455 207 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 MAOAP21397 527 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 STC1P52823 247 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 FOXA1P55317 472 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 MTCP1P56278 107 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 LSM3P62310 102 aaKnown RBP4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 GAGE4Q13068 117 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 GFI1BQ5VTD9 330 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM215Q68D42 235 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF776Q68DI1 518 aaPredicted RBP4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 ADAMTSL5Q6ZMM2 481 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 Q6ZT83 130 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 CBLL1Q75N03 491 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 FAM19A5Q7Z5A7 132 aaPredicted RBP4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 CA13Q8N1Q1 262 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 SUMF1Q8NBK3 374 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 OR11H7Q8NGC8 314 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 OR6K2Q8NGY2 324 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 OR4F5Q8NH21 305 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 TIMD4Q96H15 378 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 LYSMD1Q96S90 227 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 TBX15Q96SF7 602 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 HSPB9Q9BQS6 159 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 DERL1Q9BUN8 251 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 NOX3Q9HBY0 568 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 TESQ9UGI8 421 aaKnown RBP4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 NAT8BQ9UHF3 227 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF222Q9UK12 451 aa4.09□□□□□ -1.76
CCDC88A-209ENST00000456975 CHD8Q9HCK8 2581 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 COL4A3Q01955 1670 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 VWA8A3KMH1 1905 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 FAM157AC9JC47 383 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 PLA2G10O15496 165 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 PHF1O43189 567 aaPredicted RBP4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 FGF17O60258 216 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 EIF4E2O60573 245 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST1H2BKO60814 126 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 TNFSF13O75888 250 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST1H2BJP06899 126 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 CRYGDP07320 174 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 OR4Q2P0C623 313 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST1H2BOP23527 126 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST1H2BBP33778 126 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 SOX3P41225 446 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 TAF6P49848 677 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 POLR2HP52434 150 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 OR12D2P58182 307 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST1H2BDP58876 126 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST1H2BCP62807 126 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 MEF2BQ02080 365 aaPredicted RBP4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 MFAP5Q13361 173 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 RBM39Q14498 530 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 MMDQ15546 238 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST2H2BEQ16778 126 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 BEAN1Q3B7T3 259 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms