RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 TOR1AO14656 332 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 MYL12BO14950 172 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 CSF1P09603 554 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 VSIG10L2P0DP72 767 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 C21orf33P30042 268 aaPredicted RBP9.65□□□□□ -0.86
USP40-210ENST00000454354 BRS3P32247 399 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 ARHGDIBP52566 201 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 PRRX1P54821 245 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 HABP2Q14520 560 aaPredicted RBP9.65□□□□□ -0.86
USP40-210ENST00000454354 UTF1Q5T230 341 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 TPTE2P1Q5T6R2 138 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 AHSA2Q719I0 299 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 LYPD6Q86Y78 171 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 CDH26Q8IXH8 852 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 STX19Q8N4C7 294 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 NANOGP1Q8N7R0 232 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 SUMF2Q8NBJ7 301 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 OR10A7Q8NGE5 316 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 OR9G1Q8NH87 305 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 DERL3Q96Q80 235 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 OR14A2Q96R54 314 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 S100A13Q99584 98 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 MMP28Q9H239 520 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 DCLRE1BQ9H816 532 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 LIN7BQ9HAP6 207 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 PCDHB16Q9NRJ7 776 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 IDI2-AS1Q9NZ38 188 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 ZNF581Q9P0T4 197 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 ING4Q9UNL4 249 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 DNAH3Q8TD57 4116 aa9.65□□□□□ -0.86
USP40-210ENST00000454354 NOTCH3Q9UM47 2321 aa9.65□□□□□ -0.87
USP40-210ENST00000454354 H3BUI4 141 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 GEMIN2O14893 280 aaKnown RBP9.64□□□□□ -0.87
USP40-210ENST00000454354 OR7C1O76099 320 aaPredicted RBP9.64□□□□□ -0.87
USP40-210ENST00000454354 CSTBP04080 98 aaKnown RBP9.64□□□□□ -0.87
USP40-210ENST00000454354 SERPINA2P20848 420 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 NFYBP25208 207 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 BLCAPP62952 87 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 DEFA6Q01524 100 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 GPR176Q14439 515 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 RNLSQ5VYX0 342 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 CCDC144NLQ6NUI1 221 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 SLC16A12Q6ZSM3 486 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 BPIFB6Q8NFQ5 453 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 THRSPQ92748 146 aa9.64□□□□□ -0.87
USP40-210ENST00000454354 RCC2Q9P258 522 aaKnown RBP9.64□□□□□ -0.87
USP40-210ENST00000454354 AMMECR1Q9Y4X0 333 aaPredicted RBP9.64□□□□□ -0.87
USP40-210ENST00000454354 PNMA8CA0A1B0GUJ8 204 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 A0A1W2PP11 408 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 TMEM30CPA0ZSE6 113 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 ANKRD65E5RJM6 399 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 J3QR06 171 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 PIN1P1O15428 100 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 FBXO24O75426 580 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 OR2F2O95006 317 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 GTF2F2P13984 249 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 CELP19835 753 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 MAPK3P27361 379 aaPredicted RBP9.63□□□□□ -0.87
USP40-210ENST00000454354 SSTR5P35346 364 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 VDAC2P45880 294 aaPredicted RBP9.63□□□□□ -0.87
USP40-210ENST00000454354 SLC22A6Q4U2R8 563 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 PDLIM3Q53GG5 364 aaPredicted RBP9.63□□□□□ -0.87
USP40-210ENST00000454354 FBLN7Q53RD9 439 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 Q6ZS46 218 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 C11orf44Q8N8P7 122 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 FAM110DQ8TAY7 271 aaPredicted RBP9.63□□□□□ -0.87
USP40-210ENST00000454354 MRGPRDQ8TDS7 321 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 MRPS24Q96EL2 167 aaKnown RBP9.63□□□□□ -0.87
USP40-210ENST00000454354 AKR1E2Q96JD6 320 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 RBM14Q96PK6 669 aaKnown RBP9.63□□□□□ -0.87
USP40-210ENST00000454354 OCSTAMPQ9BR26 566 aa9.63□□□□□ -0.87
USP40-210ENST00000454354 NKX1-2Q9UD57 310 aaPredicted RBP9.63□□□□□ -0.87
USP40-210ENST00000454354 MRPS28Q9Y2Q9 187 aaKnown RBP9.63□□□□□ -0.87
USP40-210ENST00000454354 A0A1W2PPI3 338 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A10PA6NDY2 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A18PA6NE21 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A16PA6NEW6 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A20PA6NIJ5 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A7PA6NKC0 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A9PA6NNJ1 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A12PA8MX19 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A5PA8MXJ8 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A23PA8MXZ1 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 CDK1P06493 297 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A15PP0C7V4 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A13PP0C7W8 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A14PP0C7W9 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 FAM90A24PP0C7X0 464 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 GZMHP20718 246 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 CD24P25063 80 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 MNDAP41218 407 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 RBM39Q14498 530 aaKnown RBP9.62□□□□□ -0.87
USP40-210ENST00000454354 TMEM95Q3KNT9 176 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 GLIPR1L1Q6UWM5 242 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 ZNF497Q6ZNH5 498 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 THNSL2Q86YJ6 484 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 JAGN1Q8N5M9 183 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 NKAIN3Q8N8D7 197 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 OR52M1Q8NGK5 317 aa9.62□□□□□ -0.87
USP40-210ENST00000454354 TOMM40LQ969M1 308 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms