RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 RBFOX3A6NFN3 312 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 J3QT63 122 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 SNRPCP09234 159 aaKnown RBP15.02■□□□□ -0
PTPRF-209ENST00000438120 IL22RA2Q969J5 263 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 ZNF501Q96CX3 271 aaPredicted RBP15.02■□□□□ -0
PTPRF-209ENST00000438120 FAM210BQ96KR6 192 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 PSG2P11465 335 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 ACAA2P42765 397 aaKnown RBP15.02■□□□□ -0
PTPRF-209ENST00000438120 SPCS3P61009 180 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 PMS2P11Q13670 270 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 SLC26A10Q8NG04 563 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 CES1P1Q9UKY3 287 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 TPRP12270 2363 aaKnown RBP15.02■□□□□ -0
PTPRF-209ENST00000438120 ARG1P05089 322 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 DAOP14920 347 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 ATP6V1FQ16864 119 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 RBM38Q9H0Z9 239 aaKnown RBP15.02■□□□□ -0
PTPRF-209ENST00000438120 SLC7A10Q9NS82 523 aa15.02■□□□□ -0
PTPRF-209ENST00000438120 A0A0J9YW62 118 aa15.02□□□□□ -0.01
PTPRF-209ENST00000438120 PPP1CCP36873 323 aaKnown RBP15.02□□□□□ -0.01
PTPRF-209ENST00000438120 LILRB1Q8NHL6 650 aaPredicted RBP15.02□□□□□ -0.01
PTPRF-209ENST00000438120 COL10A1Q03692 680 aa15.02□□□□□ -0.01
PTPRF-209ENST00000438120 GZMHP20718 246 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 GMPPAQ96IJ6 420 aaPredicted RBP15.01□□□□□ -0.01
PTPRF-209ENST00000438120 NKX2-8O15522 239 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 SNCGO76070 127 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 IGF2P01344 180 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 ACP1P24666 158 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 PMS2CLQ68D20 193 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 C5orf17Q8NAS9 161 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 PRO1933Q9H354 126 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 WDR54Q9H977 334 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 KNTC1P50748 2209 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 C11orf94C9JXX5 98 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 P2RY1P47900 373 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 HLA-DRB3P79483 266 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 OIT3Q8WWZ8 545 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 CLN8Q9UBY8 286 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 KCNAB3O43448 404 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 NAAAQ02083 359 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 TECRQ9NZ01 308 aaKnown RBP15.01□□□□□ -0.01
PTPRF-209ENST00000438120 IGKV1-8A0A0C4DH67 115 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 TEX50A0A1B0GTY4 177 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 ZNF596Q8TC21 504 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 ISOC2Q96AB3 205 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 LPAR3Q9UBY5 353 aa15.01□□□□□ -0.01
PTPRF-209ENST00000438120 PLPPR5Q32ZL2 321 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 LINC00052Q96N35 136 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 ORM1P02763 201 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 ARID1AO14497 2285 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 LY86O95711 162 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 CRHP06850 196 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 OR4X1Q8NH49 305 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 RNF122Q9H9V4 155 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 AURKAIP1Q9NWT8 199 aaPredicted RBP15□□□□□ -0.01
PTPRF-209ENST00000438120 WNT5AP41221 380 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 TMEM91Q6ZNR0 172 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 MS4A5Q9H3V2 200 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 OR2W1Q9Y3N9 320 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 NANOS3P60323 173 aaKnown RBP15□□□□□ -0.01
PTPRF-209ENST00000438120 INO80CQ6PI98 192 aaPredicted RBP15□□□□□ -0.01
PTPRF-209ENST00000438120 OR5A2Q8NGI9 324 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 OR5R1Q8NH85 324 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 MS4A10Q96PG2 267 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 CHST5Q9GZS9 411 aa15□□□□□ -0.01
PTPRF-209ENST00000438120 SLC25A10Q9UBX3 287 aaPredicted RBP15□□□□□ -0.01
PTPRF-209ENST00000438120 RPL7P18124 248 aaKnown RBP14.99□□□□□ -0.01
PTPRF-209ENST00000438120 MMDQ15546 238 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 C8orf82Q6P1X6 216 aaPredicted RBP14.99□□□□□ -0.01
PTPRF-209ENST00000438120 HEXA-AS1Q9H8Q6 139 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 RABAC1Q9UI14 185 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 VSIG4Q9Y279 399 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 PCM1Q15154 2024 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 CTDSPLO15194 276 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 VDAC1P21796 283 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 STPG1Q5TH74 334 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 C10orf35Q96D05 121 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 FAM222BQ8WU58 562 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 TMEM204Q9BSN7 226 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 RCC2Q9P258 522 aaKnown RBP14.99□□□□□ -0.01
PTPRF-209ENST00000438120 RGS13O14921 159 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 OR8I2Q8N0Y5 310 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 SP7Q8TDD2 431 aaPredicted RBP14.99□□□□□ -0.01
PTPRF-209ENST00000438120 MS4A3Q96HJ5 214 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 OR11H7Q8NGC8 314 aa14.99□□□□□ -0.01
PTPRF-209ENST00000438120 RGP1Q92546 391 aaPredicted RBP14.99□□□□□ -0.01
PTPRF-209ENST00000438120 EAF1Q96JC9 268 aaPredicted RBP14.99□□□□□ -0.01
PTPRF-209ENST00000438120 CBY3A6NI87 242 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 RPL36A-HNRNPH2H7BZ11 118 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 SCMH1Q96GD3 660 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 ATXN7O15265 892 aaPredicted RBP14.98□□□□□ -0.01
PTPRF-209ENST00000438120 FAM87AP0C7U9 286 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 FAM157CP0CG43 387 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 OR4D10Q8NGI6 311 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 CCL13Q99616 98 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 LPAR5Q9H1C0 372 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 CLDN14O95500 239 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 BSXQ3C1V8 233 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 DGAT2L7PQ6IED9 249 aa14.98□□□□□ -0.01
PTPRF-209ENST00000438120 SLC25A42Q86VD7 318 aa14.98□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms