RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 HIKESHIQ53FT3 197 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 GAPTQ8N292 157 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 TMEM105Q8N8V8 129 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 OR2G3Q8NGZ4 309 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 LILRB1Q8NHL6 650 aaPredicted RBP11.7□□□□□ -0.54
COL6A3-207ENST00000433762 RBMXL1Q96E39 390 aaKnown RBP11.7□□□□□ -0.54
COL6A3-207ENST00000433762 POM121L2Q96KW2 1035 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 GPR87Q9BY21 358 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 MTCH1Q9NZJ7 389 aa11.7□□□□□ -0.54
COL6A3-207ENST00000433762 METTL1Q9UBP6 276 aaKnown RBP11.7□□□□□ -0.54
COL6A3-207ENST00000433762 TRAV1-1A0A0B4J248 108 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 FAM24AA6NFZ4 105 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 NEURL1O76050 574 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 MDH2P40926 338 aaKnown RBP11.69□□□□□ -0.54
COL6A3-207ENST00000433762 RPL35P42766 123 aaKnown RBP11.69□□□□□ -0.54
COL6A3-207ENST00000433762 RPS18P62269 152 aaKnown RBP11.69□□□□□ -0.54
COL6A3-207ENST00000433762 PLP2Q04941 152 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 ACSF3Q4G176 576 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-207ENST00000433762 SPIN3Q5JUX0 258 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 TMEM182Q6ZP80 229 aaPredicted RBP11.69□□□□□ -0.54
COL6A3-207ENST00000433762 IL22RA1Q8N6P7 574 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 OR10G4Q8NGN3 311 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 FAM213BQ8TBF2 198 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 OR5P3Q8WZ94 311 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 A0A087WWC5 75 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 PATE3B3GLJ2 98 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 C21orf140B9A014 251 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 ADAM20O43506 726 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 SCTP09683 121 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 GPM6AP51674 278 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 PRSS12P56730 875 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 RAB2AP61019 212 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 POLR2GP62487 172 aaKnown RBP eCLIP11.69□□□□□ -0.54
COL6A3-207ENST00000433762 SOHLH1Q5JUK2 328 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 CLEC9AQ6UXN8 241 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 TIPARPQ7Z3E1 657 aaKnown RBP11.69□□□□□ -0.54
COL6A3-207ENST00000433762 PLPPR1Q8TBJ4 325 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 MRPL30Q8TCC3 161 aaKnown RBP11.69□□□□□ -0.54
COL6A3-207ENST00000433762 RAB40CQ96S21 281 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 OR2W1Q9Y3N9 320 aa11.69□□□□□ -0.54
COL6A3-207ENST00000433762 C5orf49A4QMS7 147 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 PROB1E7EW31 1015 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 M0R036 132 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 HSPB1P04792 205 aaKnown RBP11.68□□□□□ -0.54
COL6A3-207ENST00000433762 SNRNP70P08621 437 aaKnown RBP11.68□□□□□ -0.54
COL6A3-207ENST00000433762 VCANP13611 3396 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 F2RP25116 425 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 GNG3P63215 75 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 HLA-DRB3P79483 266 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 ABHD17BQ5VST6 288 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 SPSB3Q6PJ21 355 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 PCSK4Q6UW60 755 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 H1FOOQ8IZA3 346 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-207ENST00000433762 SUMF2Q8NBJ7 301 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 LSM10Q969L4 123 aaKnown RBP11.68□□□□□ -0.54
COL6A3-207ENST00000433762 APH1AQ96BI3 265 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 THOC3Q96J01 351 aaKnown RBP11.68□□□□□ -0.54
COL6A3-207ENST00000433762 ATP5SQ99766 215 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 GP6Q9HCN6 339 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 RNF115Q9Y4L5 304 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 ZDBF2Q9HCK1 2354 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 BDP1A6H8Y1 2624 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 RBFOX3A6NFN3 312 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 ANKRD30BLA7E2S9 258 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 CD300LBA8K4G0 201 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 RAB5AP20339 215 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 CD200P41217 278 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 FHITP49789 147 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 SULT1A1P50225 295 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 TLE4Q04727 773 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 EIF2S3LQ2VIR3 472 aaKnown RBP11.68□□□□□ -0.54
COL6A3-207ENST00000433762 ZNF324BQ6AW86 544 aaPredicted RBP11.68□□□□□ -0.54
COL6A3-207ENST00000433762 PARP12Q9H0J9 701 aaKnown RBP11.68□□□□□ -0.54
COL6A3-207ENST00000433762 LHX6Q9UPM6 363 aa11.68□□□□□ -0.54
COL6A3-207ENST00000433762 IGKV1D-13A0A0B4J2D9 117 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 IGKV1-6A0A0C4DH72 117 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 SSSCA1O60232 199 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 PGLYRP1O75594 196 aaPredicted RBP11.67□□□□□ -0.54
COL6A3-207ENST00000433762 IGKV1-13P0DP09 117 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 APLNRP35414 380 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 PPP1CCP36873 323 aaKnown RBP11.67□□□□□ -0.54
COL6A3-207ENST00000433762 ZNF506Q5JVG8 444 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 TCEAL6Q6IPX3 200 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 Q8IYB0 196 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 NAXEQ8NCW5 288 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 OR5C1Q8NGR4 320 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 TMEM171Q8WVE6 324 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 RNF150Q9ULK6 438 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 ARHGAP21Q5T5U3 1957 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 WRBO00258 174 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 C1QL1O75973 258 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 S100A6P06703 90 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 OR8U8P0C7N1 319 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 GLI4P10075 376 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 TAS2R30P59541 319 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 B2MP61769 119 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 PDCD1Q15116 288 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 STX12Q86Y82 276 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 TUSC5Q8IXB3 177 aa11.67□□□□□ -0.54
COL6A3-207ENST00000433762 ODF3L1Q8IXM7 274 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms