RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 MLNRO43193 412 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 CBR3O75828 277 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 DIRAS3O95661 229 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 HRASP01112 189 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 FUT3P21217 361 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 PTTG1IPP53801 180 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 RPL23P62829 140 aaKnown RBP4.44□□□□□ -1.7
RIF1-203ENST00000428287 HIST1H3AP68431 136 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 ID2Q02363 134 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 Q6ZPA2 131 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 ZCCHC14Q8WYQ9 949 aaKnown RBP4.44□□□□□ -1.7
RIF1-203ENST00000428287 OR10A5Q9H207 317 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 PRSS50Q9UI38 385 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 MRPS28Q9Y2Q9 187 aaKnown RBP4.44□□□□□ -1.7
RIF1-203ENST00000428287 INSL6Q9Y581 213 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 TCRBV21S2A2A0A5A6 115 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 ZNF878C9JN71 531 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 PLRG1O43660 514 aaKnown RBP4.44□□□□□ -1.7
RIF1-203ENST00000428287 STATHP02808 62 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 RPL29P47914 159 aaKnown RBP4.44□□□□□ -1.7
RIF1-203ENST00000428287 RPS21P63220 83 aaKnown RBP4.44□□□□□ -1.7
RIF1-203ENST00000428287 CSNK2A1P68400 391 aaPredicted RBP4.44□□□□□ -1.7
RIF1-203ENST00000428287 GNMTQ14749 295 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 BSXQ3C1V8 233 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 CSNK2A3Q8NEV1 391 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 SPSB1Q96BD6 273 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 CCDC3Q9BQI4 270 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 ZBP1Q9H171 429 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 SERINC1Q9NRX5 453 aa4.44□□□□□ -1.7
RIF1-203ENST00000428287 LOC105371242A0A075B767 164 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 SYNDIG1LA6NDD5 238 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 HCRTR2O43614 444 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 RPLP1P05386 114 aaKnown RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 RPL23AP62750 156 aaKnown RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 SPRED2Q7Z698 418 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 CA13Q8N1Q1 262 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 CALHM2Q9HA72 323 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 Q9N2K0 584 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 FAM60AQ9NP50 221 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 HCFC1R1Q9NWW0 138 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 PRR13Q9NZ81 148 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 DEC1Q9P2X7 70 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 WNT6Q9Y6F9 365 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 NIPBLQ6KC79 2804 aaeCLIP4.43□□□□□ -1.71e-8■■□□□ 13.7
RIF1-203ENST00000428287 TRBV20OR9-2A0A075B6H5 130 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 NAPSAO96009 420 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 CD55P08174 381 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 OR10J1P30954 320 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 OR1D5P58170 312 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 MFAP5Q13361 173 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 UBE2V1Q13404 147 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 SP6Q3SY56 376 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 OR2AJ1Q8NGZ0 328 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 SLC35E1Q96K37 410 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 DIRC2Q96SL1 478 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 ZNF581Q9P0T4 197 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 A8MXE2 369 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 WISP1O95388 367 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 DNASE1L1P49184 302 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 SMAD4Q13485 552 aaKnown RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 CYB5R2Q6BCY4 276 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 ZNF880Q6PDB4 577 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 OR5D18Q8NGL1 313 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 GPR119Q8TDV5 335 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 CYYR1Q96J86 154 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 SPACA5Q96QH8 159 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 PBOV1Q9GZY1 135 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 VDAC3Q9Y277 283 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 PXMP4Q9Y6I8 212 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 ABCA2Q9BZC7 2435 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 MPZL1O95297 269 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 NKX2-1P43699 371 aaPredicted RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 S100A10P60903 97 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 P4HA3Q7Z4N8 544 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 MRPL41Q8IXM3 137 aaKnown RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 CMTM1Q8IZ96 169 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 ST8SIA1Q92185 356 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 REEP6Q96HR9 211 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 WFIKKN1Q96NZ8 548 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 OR2M4Q96R27 311 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 ZNF2Q9BSG1 426 aaPredicted RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 ZNF703Q9H7S9 590 aaPredicted RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 IGSF23A1L1A6 192 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 H3BSH0 61 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 IGHG1P01857 330 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 RPL15P61313 204 aaKnown RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 RAB11AP62491 216 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 TCTN1Q2MV58 587 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 PNKDQ8N490 385 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 SLAMF6Q96DU3 332 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 ZNF286AQ9HBT8 521 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 MBNL1Q9NR56 388 aaKnown RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 COA3Q9Y2R0 106 aaPredicted RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 TRAF3IP2O43734 574 aaPredicted RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 PPYP01298 95 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 ZNF823P16415 610 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 OR8B8Q15620 311 aa4.43□□□□□ -1.7
RIF1-203ENST00000428287 ARSJQ5FYB0 599 aaPredicted RBP4.43□□□□□ -1.7
RIF1-203ENST00000428287 TMEM42Q69YG0 159 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms