RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 NEU1Q99519 415 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 SEC22CQ9BRL7 303 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 FUNDC2Q9BWH2 189 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 MIXL1Q9H2W2 232 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ST6GALNAC4Q9H4F1 302 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ANXA10Q9UJ72 324 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 PLLPQ9Y342 182 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 CENPVL3A0A0U1RRI6 287 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 A0A1B0GU03 582 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 STX16-NPEPL1H3BU86 382 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 DCTN6O00399 190 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 FOXS1O43638 330 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 FGF17O60258 216 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 FAM189A1O60320 539 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OR1I1O60431 355 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 SPINK4O60575 86 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 MOSP00540 346 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 DANCRP0C864 163 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 GYPEP15421 78 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 CD1DP15813 335 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ATP6V1B2P21281 511 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 LCN1P31025 176 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ALDH3B2P48448 385 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 TSPAN5P62079 268 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF45Q02386 682 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 RIPPLY1Q0D2K3 151 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 RAB40BQ12829 278 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 CASP8Q14790 479 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 FXYD3Q14802 87 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF181Q2M3W8 571 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 TMED4Q7Z7H5 227 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 Q8IYB0 196 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2C3Q8N628 320 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2AE1Q8NHA4 323 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OR10J5Q8NHC4 309 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 ACTRT2Q8TDY3 377 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 UFD1Q92890 307 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 IGF2BP2-AS1Q96M15 143 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 RNF126Q9BV68 326 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 YTHDF1Q9BYJ9 559 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 C11orf54Q9H0W9 315 aaPredicted RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 OR51V1Q9H2C8 321 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 CTNNBIP1Q9NSA3 81 aaPredicted RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 TREX1Q9NSU2 369 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 RABL2AQ9UBK7 228 aaPredicted RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 METTL1Q9UBP6 276 aaKnown RBP2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 DAPK2Q9UIK4 370 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 RPH3ALQ9UNE2 315 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 RABL2BQ9UNT1 228 aa2.19□□□□□ -2.06
CCDC88A-205ENST00000426576 TRAV36DV7A0A075B6V5 113 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 A0A087WZ39 114 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 C5orf51A6NDU8 294 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 H3BMM0 161 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 TACSTD2P09758 323 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 UBCP0CG48 685 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 HIST1H1BP16401 226 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF32P17041 273 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 EFNA1P20827 205 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 PRKACBP22694 351 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 MC5RP33032 325 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 GALR1P47211 349 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF137PP52743 207 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 ATXN7L3Q14CW9 347 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 PGGHGQ32M88 737 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 PLPPR5Q32ZL2 321 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 UBE2NLQ5JXB2 153 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 FGFRL1Q8N441 504 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 RPP25LQ8N5L8 163 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CELF2-AS1Q8N7Q2 184 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 LYPD6BQ8NI32 183 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 TEX47Q8TBZ9 253 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 UBE2WQ96B02 151 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 MARK4Q96L34 752 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CXorf58Q96LI9 332 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 KCNA7Q96RP8 456 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC25A31Q9H0C2 315 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 RNF122Q9H9V4 155 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 UGT2A1Q9Y4X1 527 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3OR16-13A0A075B7E8 117 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3-74A0A0B4J1X5 117 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2AT4A6NND4 320 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF850A8MQ14 1090 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 C10orf142B7Z368 130 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 PRR23D1E9PI22 279 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 RFXANKO14593 260 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CDIPTO14735 213 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2F2O95006 317 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 DUSP14O95147 198 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CST1P01037 141 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 HLA-AP01891 365 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 PATE4P0C8F1 98 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 PRR23D2P0DMB1 279 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 RPL14P50914 215 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF763Q0D2J5 394 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 IRF3Q14653 427 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 C5orf64Q2M2E5 130 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 RBM48Q5RL73 367 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 MORN3Q6PF18 240 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 C12orf56Q8IXR9 622 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 LINC00528Q8N1L1 170 aa2.18□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms