RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 GLRX2Q9NS18 164 aa9.48□□□□□ -0.89
LIMS1-207ENST00000422797 ATP23Q9Y6H3 246 aa9.48□□□□□ -0.89
LIMS1-207ENST00000422797 RALGAPA1Q6GYQ0 2036 aa9.48□□□□□ -0.89
LIMS1-207ENST00000422797 IGHV3-15A0A0B4J1V0 119 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 SLC22A20A6NK97 555 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 NPIPB11E5RHQ5 1161 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 TNFSF11O14788 317 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 DEGS1O15121 323 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST1H2BKO60814 126 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST1H2BJP06899 126 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 KLK3P07288 261 aaPredicted RBP9.47□□□□□ -0.89
LIMS1-207ENST00000422797 CCL3P10147 92 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST1H2BOP23527 126 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 EPHA8P29322 1005 aaPredicted RBP9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST1H2BBP33778 126 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 CARD18P57730 90 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 FOXL2P58012 376 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 MLF1P58340 268 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST1H2BDP58876 126 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST1H2BCP62807 126 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 CCL20P78556 96 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 PSG4Q00888 419 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST2H2BEQ16778 126 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 LBHQ53QV2 105 aaPredicted RBP9.47□□□□□ -0.89
LIMS1-207ENST00000422797 DMRTC1Q5HYR2 192 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.47□□□□□ -0.89
LIMS1-207ENST00000422797 COLCA1Q6ZS62 124 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 MOB1BQ7L9L4 216 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 GAPTQ8N292 157 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 SPEM1Q8N4L4 309 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 OR5R1Q8NH85 324 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 PIGCQ92535 297 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST1H2BHQ93079 126 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 FAM210BQ96KR6 192 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST1H2BNQ99877 126 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 HIST1H2BMQ99879 126 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 PRDM6Q9NQX0 595 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 RNF115Q9Y4L5 304 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 LAMA3Q16787 3333 aa9.47□□□□□ -0.89
LIMS1-207ENST00000422797 TRANK1O15050 2925 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 FAM221AA4D161 298 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 ZNF716A6NP11 495 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 TSTD3H0UI37 97 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 H0YL77 283 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 CHST1O43916 411 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 YIF1AO95070 293 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 COX6A1P12074 109 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 F2RP25116 425 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 PKIAP61925 76 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 TRA2AQ13595 282 aaKnown RBP eCLIP9.46□□□□□ -0.89
LIMS1-207ENST00000422797 PYY3Q5JQD4 70 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 ZNF600Q6ZNG1 722 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 ZNF818PQ6ZRF7 136 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 SLC25A26Q70HW3 274 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 MRGPRGQ86SM5 289 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 RPS19BP1Q86WX3 136 aaKnown RBP9.46□□□□□ -0.89
LIMS1-207ENST00000422797 HIST3H2BBQ8N257 126 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 SUMF1Q8NBK3 374 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 PLPPR1Q8TBJ4 325 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 DYRK2Q92630 601 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 AGMATQ9BSE5 352 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 PHF7Q9BWX1 381 aaPredicted RBP9.46□□□□□ -0.89
LIMS1-207ENST00000422797 SRXN1Q9BYN0 137 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 LINC00470Q9BZP3 86 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 GPR35Q9HC97 309 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 UFSP2Q9NUQ7 469 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 PITPNC1Q9UKF7 332 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 TIMM9Q9Y5J7 89 aa9.46□□□□□ -0.89
LIMS1-207ENST00000422797 A0A1B0GV50 99 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 OR5H1A6NKK0 313 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 FAM90A26D6RGX4 464 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 TRAPPC2LH3BP13 241 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 CYB5BO43169 146 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 P04436 131 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 SERPINE2P07093 398 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 B4GALT1P15291 398 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 OMGP23515 440 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 APLNRP35414 380 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 B3GALT5-AS1P59052 145 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 CCL7P80098 99 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 CEACAM21Q3KPI0 293 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 CXorf66Q5JRM2 361 aaPredicted RBP9.46□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF787Q6DD87 383 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 TCEAL6Q6IPX3 200 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 TGIF2LYQ8IUE0 185 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 ZDHHC23Q8IYP9 409 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 RNASE11Q8TAA1 199 aaKnown RBP9.46□□□□□ -0.9
LIMS1-207ENST00000422797 BTF3L4Q96K17 158 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 CABLES2Q9BTV7 478 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 PROK2Q9HC23 129 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 VAX2Q9UIW0 290 aa9.46□□□□□ -0.9
LIMS1-207ENST00000422797 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 CYTIPO60759 359 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 PGLYRP1O75594 196 aaPredicted RBP9.45□□□□□ -0.9
LIMS1-207ENST00000422797 CST7O76096 145 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 MMP7P09237 267 aaPredicted RBP9.45□□□□□ -0.9
LIMS1-207ENST00000422797 CXCL1P09341 107 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 MDH2P40926 338 aaKnown RBP9.45□□□□□ -0.9
LIMS1-207ENST00000422797 ERVFRD-1P60508 538 aa9.45□□□□□ -0.9
LIMS1-207ENST00000422797 ZNF154Q13106 437 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms