RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 IGHV4-34P06331 123 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 VDAC1P21796 283 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 FASLGP48023 281 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 LBX1P52954 281 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 GNB2P62879 340 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 HERPUD1Q15011 391 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 PLPPR5Q32ZL2 321 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 ACSF3Q4G176 576 aaPredicted RBP9.22□□□□□ -0.93
USP54-204ENST00000422491 MRGPRGQ86SM5 289 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 MRPL41Q8IXM3 137 aaKnown RBP9.22□□□□□ -0.93
USP54-204ENST00000422491 GJC3Q8NFK1 279 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 ZNF296Q8WUU4 475 aaPredicted RBP9.22□□□□□ -0.93
USP54-204ENST00000422491 THOC3Q96J01 351 aaKnown RBP9.22□□□□□ -0.93
USP54-204ENST00000422491 MRGPRX4Q96LA9 322 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 OXGR1Q96P68 337 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 RBKSQ9H477 322 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 Q9N2K0 584 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 TAAR3PQ9P1P4 343 aa9.22□□□□□ -0.93
USP54-204ENST00000422491 POLR3KQ9Y2Y1 108 aaPredicted RBP9.22□□□□□ -0.93
USP54-204ENST00000422491 CEBPZOSA8MTT3 80 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 M0R135 149 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 MSR1P21757 451 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 TUBG1P23258 451 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 UCP1P25874 307 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 CTHP32929 405 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 GALR1P47211 349 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 ZNF799Q96GE5 643 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 GPHA2Q96T91 129 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 PCGF1Q9BSM1 259 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 CHRNA10Q9GZZ6 450 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 SLC7A10Q9NS82 523 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 PRSS50Q9UI38 385 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 CBY1Q9Y3M2 126 aa9.21□□□□□ -0.93
USP54-204ENST00000422491 IFNA5P01569 189 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 THEGLP0DJG4 465 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 ELLP55199 621 aaPredicted RBP9.21□□□□□ -0.94
USP54-204ENST00000422491 HIST1H3AP68431 136 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 MRPS34P82930 218 aaKnown RBP9.21□□□□□ -0.94
USP54-204ENST00000422491 GAGE1Q13065 139 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 SHHQ15465 462 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 PRSS8Q16651 343 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 KIAA2026Q5HYC2 2103 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 ZNF818PQ6ZRF7 136 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 GBGT1Q8N5D6 347 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 RNF138Q8WVD3 245 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 TMEM37Q8WXS4 190 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 SMIM7Q9BQ49 75 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 ELOVL1Q9BW60 279 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 GPR27Q9NS67 375 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 FUT9Q9Y231 359 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 GOLT1BQ9Y3E0 138 aa9.21□□□□□ -0.94
USP54-204ENST00000422491 IGHV3-20A0A0C4DH32 117 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 H3BP45 60 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 IFNL4K9M1U5 179 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 PDCD6O75340 191 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 CRYABP02511 175 aaKnown RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 NPSP0C0P6 89 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 IDH3GP51553 393 aaPredicted RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 ZNF41P51814 821 aaPredicted RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 RPL23P62829 140 aaKnown RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 DAZAP2Q15038 168 aaPredicted RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 RNPS1Q15287 305 aaKnown RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 C21orf62-AS1Q17RA5 79 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 TMEM241Q24JQ0 296 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 BSXQ3C1V8 233 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 TMEM211Q6ICI0 200 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 TMEM92Q6UXU6 159 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 OSR2Q8N2R0 312 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 OR10J5Q8NHC4 309 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 NABP1Q96AH0 204 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 H7BYZ3 331 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 KBTBD11O94819 623 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 HRASP01112 189 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 FBLP22087 321 aaKnown RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 TMEM267Q0VDI3 215 aaPredicted RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 PDCD1Q15116 288 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 ACOT6Q3I5F7 207 aaPredicted RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 SPIN3Q5JUX0 258 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 PHYHD1Q5SRE7 291 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 SLC25A24Q6NUK1 477 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 GAPTQ8N292 157 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 THAP3Q8WTV1 239 aaPredicted RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 PSMG3Q9BT73 122 aaPredicted RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 REPIN1Q9BWE0 567 aaKnown RBP9.2□□□□□ -0.94
USP54-204ENST00000422491 RNF150Q9ULK6 438 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 ST3GAL6Q9Y274 331 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 FER1L5A0AVI2 2057 aa9.2□□□□□ -0.94
USP54-204ENST00000422491 SPAG17Q6Q759 2223 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 LILRA5A6NI73 299 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 KIAA1324LA8MWY0 1029 aaPredicted RBP9.19□□□□□ -0.94
USP54-204ENST00000422491 TYMSP04818 313 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 CST2P09228 141 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 FOXL2P58012 376 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 RTP5Q14D33 572 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 ZNF774Q6NX45 483 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 OR2AE1Q8NHA4 323 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 OR5B12Q96R08 314 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 FKBP11Q9NYL4 201 aa9.19□□□□□ -0.94
USP54-204ENST00000422491 CHD3Q12873 2000 aaKnown RBP9.19□□□□□ -0.94
USP54-204ENST00000422491 RALGAPA1Q6GYQ0 2036 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms