RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 OR4A4PQ8NGN8 299 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 MRPL30Q8TCC3 161 aaKnown RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 SLC6A7Q99884 636 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 VRK1Q99986 396 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 CABLES2Q9BTV7 478 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 WDR13Q9H1Z4 485 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF665Q9H7R5 613 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 SEBOXQ9HB31 216 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 TMEM165Q9HC07 324 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 MYOZ1Q9NP98 299 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 KCNIP1Q9NZI2 227 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF581Q9P0T4 197 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF230Q9UIE0 474 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 TRAPPC2LQ9UL33 140 aa5.01□□□□□ -1.61
HMGB3-202ENST00000419110 C14orf166Q9Y224 244 aaKnown RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 YLPM1P49750 1951 aaKnown RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 USP9XQ93008 2570 aaPredicted RBP5.01□□□□□ -1.61
HMGB3-202ENST00000419110 HRNRQ86YZ3 2850 aaPredicted RBP5□□□□□ -1.61
HMGB3-202ENST00000419110 SPTAN1Q13813 2472 aaKnown RBP5□□□□□ -1.61
HMGB3-202ENST00000419110 MEIKINA0A087WXM9 373 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 A0A0B4J293 547 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 IGHV1-69-2A0A0G2JMI3 117 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 FAM172BPA6NC97 362 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 RFPL4AA6NLU0 287 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 TRDCB7Z8K6 153 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 RFPL4AL1F8VTS6 287 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5□□□□□ -1.61
HMGB3-202ENST00000419110 MGST3O14880 152 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 HSPA12AO43301 675 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 TK1P04183 234 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 OR5H8P0DN80 308 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 PSG2P11465 335 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 S100GP29377 79 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 UBE2MP61081 183 aaKnown RBP5□□□□□ -1.61
HMGB3-202ENST00000419110 RRAS2P62070 204 aaPredicted RBP5□□□□□ -1.61
HMGB3-202ENST00000419110 IL13RA1P78552 427 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 PAX5Q02548 391 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 CBX3Q13185 183 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 SURF2Q15527 256 aaPredicted RBP5□□□□□ -1.61
HMGB3-202ENST00000419110 HFEQ30201 348 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 ABCA11PQ4W5N1 156 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 C4orf46Q504U0 113 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 KRBOX4Q5JUW0 171 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 TEX36Q5VZQ5 186 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 SLC35E4Q6ICL7 350 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 SLC36A1Q7Z2H8 476 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF554Q86TJ5 538 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 MUC20Q8N307 709 aaPredicted RBP5□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF561Q8N587 486 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 CCDC71LQ8N9Z2 235 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 OR5T2Q8NGG2 359 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 OR6F1Q8NGZ6 308 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 PLPPR1Q8TBJ4 325 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 NINJ1Q92982 152 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 TOMM40LQ969M1 308 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 PPP1R14BQ96C90 147 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 TIMD4Q96H15 378 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 KIRREL1Q96J84 757 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 SNX22Q96L94 193 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 TRAF4Q9BUZ4 470 aaPredicted RBP5□□□□□ -1.61
HMGB3-202ENST00000419110 FAM234AQ9H0X4 552 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 MED28Q9H204 178 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 Q9N2K0 584 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 TMEM106BQ9NUM4 274 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 ING3Q9NXR8 418 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 LPAR3Q9UBY5 353 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF69Q9UC07 566 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 KIF25Q9UIL4 384 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF222Q9UK12 451 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 LRRK2Q5S007 2527 aa5□□□□□ -1.61
HMGB3-202ENST00000419110 UBR5O95071 2799 aaPredicted RBP5□□□□□ -1.61
HMGB3-202ENST00000419110 IGKV1D-17A0A075B6S4 117 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 PPIAL4EA0A075B759 164 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 ODAMA1E959 279 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 SNRPGP15A8MWD9 76 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 NPIPB11E5RHQ5 1161 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 PPIAL4DF5H284 164 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 TMEM178BH3BS89 294 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 PYCARD-AS1I3L0S3 204 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 C19orf84I3L1E1 186 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 SDCBPO00560 298 aaPredicted RBP4.99□□□□□ -1.61
HMGB3-202ENST00000419110 BET1O15155 118 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 SIGLEC5O15389 551 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 SPINT2O43291 252 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF737O75373 536 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 LHBP01229 141 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 HLA-AP01891 365 aaKnown RBP4.99□□□□□ -1.61
HMGB3-202ENST00000419110 IL5P05113 134 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF735P0CB33 412 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 ZNF728P0DKX0 622 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 PPIAL4FP0DN26 164 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 ANXA3P12429 323 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 COX6B1P14854 86 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 ANXA7P20073 488 aaKnown RBP4.99□□□□□ -1.61
HMGB3-202ENST00000419110 VAMP1P23763 118 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 LMO1P25800 156 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 PRDX2P32119 198 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 NPY4RP50391 375 aa4.99□□□□□ -1.61
HMGB3-202ENST00000419110 MECP2P51608 486 aaKnown RBP4.99□□□□□ -1.61
HMGB3-202ENST00000419110 P2RX3P56373 397 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms