RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 M0QZQ0 153 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 KCNAB3O43448 404 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 SUMO2P61956 95 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 ASCL5Q7RTU5 278 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 PHOSPHO2Q8TCD6 241 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 RAB1CQ92928 201 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 HIGD1AQ9Y241 93 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 SPTBN2O15020 2390 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 TRAV21A0A0B4J279 112 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 ZBTB42B2RXF5 422 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 PLPPR2Q96GM1 343 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 TXNRD2Q9NNW7 524 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 KCNK7Q9Y2U2 307 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 FCGR2BP31994 310 aaPredicted RBP11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 KISS1Q15726 138 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 GFRALQ6UXV0 394 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 ATOH1Q92858 354 aaPredicted RBP11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 HLA-DQA1P01909 254 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 GPX2P18283 190 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 COX7A1P24310 79 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 PRDX2P32119 198 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 B4GALNT1Q00973 533 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 ANKRD37Q7Z713 158 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 R3HDM4Q96D70 268 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 A0A1W2PNR3 127 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 LINC01387J3KSC0 135 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 CA6P23280 308 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 PAPPA-AS1Q5QFB9 102 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 CA13Q8N1Q1 262 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 SDF2Q99470 211 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 C7orf71A4D174 169 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 MOSPD3O75425 235 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 TMEM78Q5T7P6 136 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 RBMY1BA6NDE4 496 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 RBMY1EA6NEQ0 496 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 RBMY1DP0C7P1 496 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 RBMY1A1P0DJD3 496 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 RBMY1CP0DJD4 496 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 MRPL30Q8TCC3 161 aaKnown RBP11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 METTL26Q96S19 204 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 CYSLTR2Q9NS75 346 aa11.86□□□□□ -0.51
CCDC88A-204ENST00000413716 TNFSF10P50591 281 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 ZNF750Q32MQ0 723 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 PLPP1O14494 284 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 DAOP14920 347 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 C2orf83Q53S99 150 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 SGMS2Q8NHU3 365 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 ZG16BQ96DA0 208 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 ALKBH3Q96Q83 286 aaPredicted RBP11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 KLF16Q9BXK1 252 aaPredicted RBP11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 TMSB15BA0A087X1C1 80 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 EIF3IQ13347 325 aaKnown RBP11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 LMO3Q8TAP4 145 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 C19orf53Q9UNZ5 99 aaPredicted RBP11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 TRDCB7Z8K6 153 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 SOD3P08294 240 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 CGB2Q6NT52 195 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 GALNT14Q96FL9 552 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 KIR2DL4Q99706 377 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 H0YIG0 161 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 TEPPQ6URK8 271 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 TTC9BQ8N6N2 239 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 SPCS1Q9Y6A9 102 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 CDC14BO60729 498 aa11.85□□□□□ -0.51
CCDC88A-204ENST00000413716 CCL17Q92583 94 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 C16orf70Q9BSU1 422 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 FOXJ2Q9P0K8 574 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 IL19Q9UHD0 177 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 PRNDQ9UKY0 176 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 ATRXP46100 2492 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 TMEM249Q2WGJ8 235 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 FGF13Q92913 245 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 GMPPAQ96IJ6 420 aaPredicted RBP11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 C16orf92Q96LL3 132 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 DERL1Q9BUN8 251 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 COL3A1P02461 1466 aaPredicted RBP11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 LRRC75BQ2VPJ9 315 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 HSF5Q4G112 596 aaPredicted RBP11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 FCMRO60667 390 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 SRSF5Q13243 272 aaKnown RBP11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 SLC39A5Q6ZMH5 540 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 SIGLEC11Q96RL6 698 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 LINC00470Q9BZP3 86 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 FZR1Q9UM11 496 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 CDK2AP2O75956 126 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 NOTCH3Q9UM47 2321 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 S1PR2O95136 353 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 PFN3P60673 137 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 KCNE5Q9UJ90 142 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 MAST2Q6P0Q8 1798 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 IGHV3-20A0A0C4DH32 117 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 A0A1B0GWB2 263 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 RARRES2Q99969 163 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 SLC26A1Q9H2B4 701 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 SMDT1Q9H4I9 107 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 MRC1P22897 1456 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 GJB3O75712 270 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 TIMP1P01033 207 aa11.84□□□□□ -0.51
CCDC88A-204ENST00000413716 DSCR4P56555 118 aaPredicted RBP11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms