RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 OR5D18Q8NGL1 313 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 PINX1Q96BK5 328 aaKnown RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 MOB3AQ96BX8 217 aa6.41□□□□□ -1.38
SCN9A-202ENST00000409435 TMEFF2Q9UIK5 374 aaPredicted RBP6.41□□□□□ -1.38
SCN9A-202ENST00000409435 PARP14Q460N5 1801 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 THADAQ6YHU6 1953 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 LOC107984156A0A0G2JMH3 177 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 OR2T8A6NH00 312 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 DIRC3C9JPN6 131 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 NKX2-2O95096 273 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF32P17041 273 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 RPL18Q07020 188 aaKnown RBP6.4□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF124Q15973 351 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 Q499Y3 187 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 ACSF3Q4G176 576 aaPredicted RBP6.4□□□□□ -1.38
SCN9A-202ENST00000409435 MIDNQ504T8 468 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 MDP1Q86V88 176 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 ARL17AQ8IVW1 177 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF519Q8TB69 540 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 VN1R17PQ8TDU5 208 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 TMEM255BQ8WV15 326 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 SNX22Q96L94 193 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 SPSB2Q99619 263 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 KCNK15Q9H427 330 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 RASL12Q9NYN1 266 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 A0A0B4J293 547 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 ZNF253O75346 499 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 Q56UQ5 140 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 DMRTA1Q5VZB9 504 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 NSUN5P2Q63ZY6 315 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 RBPMS2Q6ZRY4 209 aaKnown RBP6.4□□□□□ -1.38
SCN9A-202ENST00000409435 TGIF2LXQ8IUE1 241 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 MFSD4AQ8N468 514 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 SLC38A9Q8NBW4 561 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 OR10A7Q8NGE5 316 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 OR2T10Q8NGZ9 312 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 C2orf50Q96LR7 162 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 NCOR1P1Q9H4R4 102 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 TRIP11Q15643 1979 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 KIAA1217Q5T5P2 1943 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 CORTO00230 105 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 CD160O95971 181 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 CDAP32320 146 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 HLA-DRB3P79483 266 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 LCN2P80188 198 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 BSPH1Q075Z2 132 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 KDM4DQ6B0I6 523 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 NKAIN3Q8N8D7 197 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 NUDT10Q8NFP7 164 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 C8orf46Q8TAG6 207 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 SLC25A46Q96AG3 418 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 CNRIP1Q96F85 164 aaPredicted RBP6.4□□□□□ -1.38
SCN9A-202ENST00000409435 NUDT11Q96G61 164 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 GABARAPL1Q9H0R8 117 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 COA4Q9NYJ1 87 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 THYN1Q9P016 225 aa6.4□□□□□ -1.38
SCN9A-202ENST00000409435 DIMT1Q9UNQ2 313 aaKnown RBP6.4□□□□□ -1.38
SCN9A-202ENST00000409435 THSD7BQ9C0I4 1608 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF205O95201 554 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 TIMM23BQ5SRD1 257 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 EDARADDQ8WWZ3 215 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 RHOVQ96L33 236 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 SELENOIQ9C0D9 397 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 COMMD5Q9GZQ3 224 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 BEX4Q9NWD9 120 aaPredicted RBP6.4□□□□□ -1.39
SCN9A-202ENST00000409435 NAGKQ9UJ70 344 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 MRPS28Q9Y2Q9 187 aaKnown RBP6.4□□□□□ -1.39
SCN9A-202ENST00000409435 G3V2L1 256 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 NXPH3O95157 252 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 SLC25A5P05141 298 aaKnown RBP6.4□□□□□ -1.39
SCN9A-202ENST00000409435 SHC1P29353 583 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 H2BFWTQ7Z2G1 175 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 SYT9Q86SS6 491 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 ZNF721Q8TF20 911 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 ADAT3Q96EY9 351 aaPredicted RBP6.4□□□□□ -1.39
SCN9A-202ENST00000409435 NEIL1Q96FI4 390 aaPredicted RBP6.4□□□□□ -1.39
SCN9A-202ENST00000409435 Q96M85 177 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 IKZF5Q9H5V7 419 aa6.4□□□□□ -1.39
SCN9A-202ENST00000409435 PEF1Q9UBV8 284 aaKnown RBP6.4□□□□□ -1.39
SCN9A-202ENST00000409435 A0A1W2PRX2 142 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 RHOBP62745 196 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 TSPAN31Q12999 210 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 DOC2BQ14184 412 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 SLC25A30Q5SVS4 291 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 MYPOPQ86VE0 399 aaPredicted RBP6.39□□□□□ -1.39
SCN9A-202ENST00000409435 C9orf40Q8IXQ3 194 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 SLC22A24Q8N4F4 322 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 NPFFR1Q9GZQ6 430 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 GPR35Q9HC97 309 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 PRSS37A4D1T9 235 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 RNF223E7ERA6 249 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 GREM1O60565 184 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 CYB5R3P00387 301 aaPredicted RBP6.39□□□□□ -1.39
SCN9A-202ENST00000409435 CALCBP10092 127 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 TCL1AP56279 114 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 JOSD1Q15040 202 aaPredicted RBP6.39□□□□□ -1.39
SCN9A-202ENST00000409435 TMEM136Q6ZRR5 245 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 OR2W3Q7Z3T1 314 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 TMEM183AQ8IXX5 376 aa6.39□□□□□ -1.39
SCN9A-202ENST00000409435 CRIPAKQ8N1N5 446 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms