RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 KIR3DP1A8MWS1 328 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 J3QT63 122 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 CYB5BO43169 146 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 LPAR6P43657 344 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 OR3A1P47881 315 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 SNRPEP62304 92 aaKnown RBP16.04■□□□□ 0.16
USP48-204ENST00000400301 ZNF154Q13106 437 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 ACTL6AO96019 429 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 HEXAP06865 529 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 OR8U8P0C7N1 319 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 ZNF708P17019 499 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 C1orf87Q8N0U7 546 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 RTBDNQ9BSG5 229 aaPredicted RBP16.04■□□□□ 0.16
USP48-204ENST00000400301 GAB2Q9UQC2 676 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 CENPFP49454 3210 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 ARG1P05089 322 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 SPEM2Q0P670 501 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 TVP23CQ96ET8 276 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 COL4A3Q01955 1670 aa16.04■□□□□ 0.16
USP48-204ENST00000400301 A0A0A6YYD4 124 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 TRAV17A0A0B4J275 112 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 SP1P08047 785 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 KITLGP21583 273 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 FGF12P61328 243 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 CEACAM21Q3KPI0 293 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 ALKBH6Q3KRA9 238 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 CDCP2Q5VXM1 449 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 MOB3AQ96BX8 217 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 TM2D1Q9BX74 207 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 C7orf77A4D0Y5 90 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 PRSS44E7EML9 344 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 SUCLG1P53597 346 aaKnown RBP16.03■□□□□ 0.16
USP48-204ENST00000400301 IL24Q13007 206 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 SMIM7Q9BQ49 75 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 OR2W1Q9Y3N9 320 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 ICE1Q9Y2F5 2266 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 NQO2P16083 231 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 MDH2P40926 338 aaKnown RBP16.03■□□□□ 0.16
USP48-204ENST00000400301 KIAA1671Q9BY89 1806 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 H7BYZ3 331 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 ATP6V0CP27449 155 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 NPBWR1P48145 328 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 RAB4BP61018 213 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 PDZD11Q5EBL8 140 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 FBXW9Q5XUX1 488 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 MDP1Q86V88 176 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 TINAGQ9UJW2 476 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 LIPGQ9Y5X9 500 aa16.03■□□□□ 0.16
USP48-204ENST00000400301 THADAQ6YHU6 1953 aa16.02■□□□□ 0.16
USP48-204ENST00000400301 RBFOX3A6NFN3 312 aa16.02■□□□□ 0.16
USP48-204ENST00000400301 CRYBA1P05813 215 aa16.02■□□□□ 0.16
USP48-204ENST00000400301 NAT2P11245 290 aa16.02■□□□□ 0.16
USP48-204ENST00000400301 SOX8P57073 446 aa16.02■□□□□ 0.16
USP48-204ENST00000400301 RNF144BQ7Z419 303 aa16.02■□□□□ 0.16
USP48-204ENST00000400301 LYZL4Q96KX0 146 aa16.02■□□□□ 0.16
USP48-204ENST00000400301 LOC102723996A0A087X1L8 192 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 SYNGR2O43760 224 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 CYTIPO60759 359 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 ID4P47928 161 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 HLA-DRB3P79483 266 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 OR4F5Q8NH21 305 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 EDARADDQ8WWZ3 215 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 CIB3Q96Q77 187 aaPredicted RBP16.02■□□□□ 0.15
USP48-204ENST00000400301 OR4F4Q96R69 305 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 DEFB108AA8MXU0 73 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 M0R1B8 84 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 HMGB3O15347 200 aaKnown RBP16.02■□□□□ 0.15
USP48-204ENST00000400301 SYNGR1O43759 233 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 SYNGR3O43761 229 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 ZXDAP98168 799 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 KCNIP4Q6PIL6 250 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 ATRAIDQ6UW56 229 aa16.02■□□□□ 0.15
USP48-204ENST00000400301 NUFIP2Q7Z417 695 aaKnown RBP16.02■□□□□ 0.15
USP48-204ENST00000400301 MRGPRFQ96AM1 343 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 ACTR3CQ9C0K3 210 aaPredicted RBP16.01■□□□□ 0.15
USP48-204ENST00000400301 OR2D2Q9H210 308 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 SEMA5BQ9P283 1151 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 SHISA7A6NL88 538 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 COX5AP20674 150 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 SSX3Q99909 188 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 CABLES2Q9BTV7 478 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 S100A8P05109 93 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 HLA-GP17693 338 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 CCL1P22362 96 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 SLC38A11Q08AI6 406 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 OR2Z1Q8NG97 314 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 OR52M1Q8NGK5 317 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 NANPQ8TBE9 248 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 MRGPRDQ8TDS7 321 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 LAMP3Q9UQV4 416 aa16.01■□□□□ 0.15
USP48-204ENST00000400301 CACNA1GO43497 2377 aa16■□□□□ 0.15
USP48-204ENST00000400301 A0A1W2PPH5 198 aa16■□□□□ 0.15
USP48-204ENST00000400301 OR2J1Q9GZK6 312 aa16■□□□□ 0.15
USP48-204ENST00000400301 TMEM222Q9H0R3 208 aa16■□□□□ 0.15
USP48-204ENST00000400301 IGHV3-43A0A0B4J1X8 118 aa16■□□□□ 0.15
USP48-204ENST00000400301 A8MXE2 369 aa16■□□□□ 0.15
USP48-204ENST00000400301 IGHV3-43DP0DP04 118 aa16■□□□□ 0.15
USP48-204ENST00000400301 PTGDSP41222 190 aa16■□□□□ 0.15
USP48-204ENST00000400301 LDLRAD3Q86YD5 345 aa16■□□□□ 0.15
USP48-204ENST00000400301 NECAP1Q8NC96 275 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms