RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 LMO3Q8TAP4 145 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 FLRT3Q9NZU0 649 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 HSF4Q9ULV5 492 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 COX11Q9Y6N1 276 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 CLDN10P78369 228 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 RHOVQ96L33 236 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 ERRFI1Q9UJM3 462 aaPredicted RBP11.95□□□□□ -0.5
USP49-203ENST00000394253 A0A096LPE4 126 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 A0A1W2PPZ6 126 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 WDTC1Q8N5D0 677 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 OR1F12Q8NHA8 337 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 ARHGAP5-AS1Q96IT6 56 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 TMEM250H0YL14 139 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 FCMRO60667 390 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 AMY1AP04745 511 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 LPAR6P43657 344 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 SLC25A30Q5SVS4 291 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 A1L4Q6 167 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 ACVR1Q04771 509 aa11.95□□□□□ -0.5
USP49-203ENST00000394253 MRPS21P82921 87 aaKnown RBP11.94□□□□□ -0.5
USP49-203ENST00000394253 KCNAB1Q14722 419 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 PYCR3Q53H96 274 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 SARAFQ96BY9 339 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 PITX3O75364 302 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 HOXC4P09017 264 aaPredicted RBP11.94□□□□□ -0.5
USP49-203ENST00000394253 KISS1Q15726 138 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 ZFAND6Q6FIF0 208 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 WFDC8Q8IUA0 241 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 DAOP14920 347 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 MMP16P51512 607 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 RPS20P60866 119 aaKnown RBP11.94□□□□□ -0.5
USP49-203ENST00000394253 BCORP1Q8N888 145 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 SIGMAR1Q99720 223 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 F11RQ9Y624 299 aaKnown RBP11.94□□□□□ -0.5
USP49-203ENST00000394253 CCL11P51671 97 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 ETFBKMTQ8IXQ9 262 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 TMEM272A0A1B0GTI8 110 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 H3BNC9 293 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 CHST1O43916 411 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 OVCH2Q7RTZ1 564 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 PRNTQ86SH4 94 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 OR10V1Q8NGI7 309 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 CLDN16Q9Y5I7 305 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 DOCK1Q14185 1865 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 FGF9P31371 208 aaPredicted RBP11.94□□□□□ -0.5
USP49-203ENST00000394253 CSNK1EP49674 416 aaKnown RBP11.94□□□□□ -0.5
USP49-203ENST00000394253 WDR25Q64LD2 544 aaPredicted RBP11.94□□□□□ -0.5
USP49-203ENST00000394253 C20orf27Q9GZN8 174 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 ZMIZ1Q9ULJ6 1067 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 COL3A1P02461 1466 aaPredicted RBP11.94□□□□□ -0.5
USP49-203ENST00000394253 SPG11Q96JI7 2443 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 SOCS7O14512 581 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 PHLPP1O60346 1717 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 CGB2Q6NT52 195 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 ZNF600Q6ZNG1 722 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 FBXL14Q8N1E6 418 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 NOXO1Q8NFA2 376 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 SDF2Q99470 211 aa11.94□□□□□ -0.5
USP49-203ENST00000394253 SSBP4Q9BWG4 385 aaPredicted RBP11.94□□□□□ -0.5
USP49-203ENST00000394253 RNPS1Q15287 305 aaKnown RBP11.93□□□□□ -0.5
USP49-203ENST00000394253 HTR3DQ70Z44 454 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 TRAV8-2A0A0B4J237 113 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 CTAG2O75638 210 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 ABHD17CQ6PCB6 329 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 OR2Y1Q8NGV0 311 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 CITED1Q99966 193 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 H0YIG0 161 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 S1PR2O95136 353 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 NGFP01138 241 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 CTSSP25774 331 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 NKAIN2Q5VXU1 208 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 CTU1Q7Z7A3 348 aaKnown RBP11.93□□□□□ -0.5
USP49-203ENST00000394253 A0A1B0GU03 582 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 TMEM50AO95807 157 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 CTSDP07339 412 aaPredicted RBP11.93□□□□□ -0.5
USP49-203ENST00000394253 CDKN2AP42771 156 aaKnown RBP11.93□□□□□ -0.5
USP49-203ENST00000394253 CXCL12P48061 93 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 TMEM131LA2VDJ0 1609 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 RBMY1BA6NDE4 496 aaKnown RBP11.93□□□□□ -0.5
USP49-203ENST00000394253 RBMY1EA6NEQ0 496 aaKnown RBP11.93□□□□□ -0.5
USP49-203ENST00000394253 SIGLEC5O15389 551 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 RBMY1DP0C7P1 496 aaKnown RBP11.93□□□□□ -0.5
USP49-203ENST00000394253 RBMY1A1P0DJD3 496 aaKnown RBP11.93□□□□□ -0.5
USP49-203ENST00000394253 RBMY1CP0DJD4 496 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 B4GALT1P15291 398 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 CTSCP53634 463 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 ASCL5Q7RTU5 278 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 R3HDM4Q96D70 268 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 PRNDQ9UKY0 176 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 ATAD5Q96QE3 1844 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 TRAV39A0A0B4J263 110 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 TRDCB7Z8K6 153 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 VDAC1P21796 283 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 ROM1Q03395 351 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 ASCL4Q6XD76 172 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 PDXPQ96GD0 296 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 ITGB4P16144 1822 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 KIAA1549Q9HCM3 1950 aa11.93□□□□□ -0.5
USP49-203ENST00000394253 RBM11P57052 281 aaKnown RBP11.93□□□□□ -0.5
USP49-203ENST00000394253 SLC25A35Q3KQZ1 300 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms