RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 RHBDL1O75783 438 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 PTBP3O95758 552 aaKnown RBP15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 M6PRP20645 277 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 ARPC4P59998 168 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 BEX5Q5H9J7 111 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 CLEC18BQ6UXF7 455 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 KCTD9Q7L273 389 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 NEK7Q8TDX7 302 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 ST8SIA2Q92186 375 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 TMEM230Q96A57 120 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 SULT4A1Q9BR01 284 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 MRPL37Q9BZE1 423 aaKnown RBP15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 CHMP1AQ9HD42 196 aaPredicted RBP15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 ZNF230Q9UIE0 474 aaPredicted RBP15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 ESPL1Q14674 2120 aa15.41■□□□□ 0.06
CCDC88C-203ENST00000389856 ATRXP46100 2492 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 C5orf51A6NDU8 294 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 SH2D1BO14796 132 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 CTSDP07339 412 aaPredicted RBP15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 SERPINF1P36955 418 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 MDH2P40926 338 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 SMIM21Q3B7S5 101 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 LRP11Q86VZ4 500 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 EIF4E3Q8N5X7 224 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 ERGIC1Q969X5 290 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 VRK1Q99986 396 aaPredicted RBP15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 ZNF286AQ9HBT8 521 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 ANXA10Q9UJ72 324 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 BSNQ9UPA5 3926 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 SPENQ96T58 3664 aaKnown RBP15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 PCNX1Q96RV3 2341 aa15.4■□□□□ 0.06
CCDC88C-203ENST00000389856 MFSD2BA6NFX1 497 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 FAM25EA8MYX2 175 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 F8VVB4 439 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 F8VWA3 439 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 CCSO14618 274 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 PET100P0DJ07 73 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 LYL1P12980 280 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 ZNF44P15621 663 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 ZNF146Q15072 292 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 SRSF7Q16629 238 aaKnown RBP eCLIP15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 ALKAL2Q6UX46 152 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 HSD17B13Q7Z5P4 300 aaPredicted RBP15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 PLPPR2Q96GM1 343 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 SEC22AQ96IW7 307 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 ZNF488Q96MN9 340 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 DNTTIP1Q9H147 329 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 NECAP2Q9NVZ3 263 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 PRR14LQ5THK1 2151 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 ZSCAN5BA6NJL1 495 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 CRYZL1O95825 349 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 FCGR3AP08637 254 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 OR4A8P0C604 315 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 NUP62P37198 522 aaPredicted RBP15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 MSMPQ1L6U9 139 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 FAM90A1Q86YD7 464 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 BATF2Q8N1L9 274 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 LRRC20Q8TCA0 184 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 C2orf50Q96LR7 162 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 HES4Q9HCC6 221 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 C1orf123Q9NWV4 160 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 SDHAF2Q9NX18 166 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 IL19Q9UHD0 177 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 USP24Q9UPU5 2620 aa15.39■□□□□ 0.05
CCDC88C-203ENST00000389856 RNF222A6NCQ9 220 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 KRBOX1C9JBD0 128 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 PGAM2P15259 253 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 GLRA1P23415 457 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 CFHR2P36980 270 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 GATA4P43694 442 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 ADIPOQQ15848 244 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 PRAMEF6Q5VXH4 476 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 ADAM5Q6NVV9 412 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 DHRS11Q6UWP2 260 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 WDR82Q6UXN9 313 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 SUMF2Q8NBJ7 301 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 MEGF10Q96KG7 1140 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 ARPC5LQ9BPX5 153 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 REG4Q9BYZ8 158 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 TREM2Q9NZC2 230 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 RNF115Q9Y4L5 304 aa15.38■□□□□ 0.05
CCDC88C-203ENST00000389856 TEX13DA0A0J9YY54 714 aaPredicted RBP15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 SPRY3O43610 288 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 CLDN14O95500 239 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 KNG1P01042 644 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 ADH4P08319 380 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 RPS2P15880 293 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 TNFRSF1AP19438 455 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 ZP3P21754 424 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 SUPT4H1P63272 117 aaKnown RBP15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 TNFAIP6P98066 277 aaPredicted RBP15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 SHEQ5VZ18 495 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 Q6ZS49 121 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 C11orf53Q8IXP5 236 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 OR11L1Q8NGX0 322 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 STOML3Q8TAV4 291 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 OR2V2Q96R30 315 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 UFSP2Q9NUQ7 469 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 MBD2Q9UBB5 411 aa15.37■□□□□ 0.05
CCDC88C-203ENST00000389856 DNAJB11Q9UBS4 358 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms