RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 CSTBP04080 98 aaKnown RBP17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 GNAO1P09471 354 aa17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 CD28P10747 220 aa17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 RBM11P57052 281 aaKnown RBP17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 FBLIM1Q8WUP2 373 aa17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 AKR1E2Q96JD6 320 aa17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 S100A13Q99584 98 aa17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 ZNF184Q99676 751 aaPredicted RBP17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 OCSTAMPQ9BR26 566 aa17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 MMP28Q9H239 520 aa17.37■□□□□ 0.37
CCDC28B-201ENST00000373602 NOTCH1P46531 2555 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 XPNPEP2O43895 674 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 ZNF780AO75290 641 aaPredicted RBP17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 PEX14O75381 377 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 OR7C1O76099 320 aaPredicted RBP17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 OPN1MWP04001 364 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 OPN1MW2P0DN77 364 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 OPN1MW3P0DN78 364 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 FSTP19883 344 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 SERPINA2P20848 420 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 VDAC2P45880 294 aaPredicted RBP17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 TAS2R43P59537 309 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 RBM39Q14498 530 aaKnown RBP17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 TMEM95Q3KNT9 176 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 ARSJQ5FYB0 599 aaPredicted RBP17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 CCDC144NLQ6NUI1 221 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 LINC00596Q86U02 117 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 MRGPRDQ8TDS7 321 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 OR5M11Q96RB7 305 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 PLCXD1Q9NUJ7 323 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 CKLFQ9UBR5 152 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 PSORS1C1Q9UIG5 152 aa17.36■□□□□ 0.37
CCDC28B-201ENST00000373602 TRAV8-7A0A075B6U6 113 aa17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 TRBV5-7A0A0A0MS05 114 aa17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 MAGEA13PA6NCF6 341 aa17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 J3QR06 171 aa17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 GEMIN2O14893 280 aaKnown RBP17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 OR2F2O95006 317 aa17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 FBLN7Q53RD9 439 aa17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 LYG1Q8N1E2 194 aa17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 OR10A7Q8NGE5 316 aa17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 RBM14Q96PK6 669 aaKnown RBP17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 SLC25A33Q9BSK2 321 aa17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 PCDHB16Q9NRJ7 776 aa17.35■□□□□ 0.37
CCDC28B-201ENST00000373602 A0A1W2PP11 408 aa17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 MNDAP41218 407 aa17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 EMX1Q04741 257 aaPredicted RBP17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 MPV17LQ2QL34 196 aa17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 NDUFA11Q86Y39 141 aa17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 C1QL4Q86Z23 238 aa17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 RFESDQ8TAC1 157 aa17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 CAPSLQ8WWF8 208 aa17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 OR14A2Q96R54 314 aa17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 PSG11Q9UQ72 335 aa17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 AMMECR1Q9Y4X0 333 aaPredicted RBP17.34■□□□□ 0.37
CCDC28B-201ENST00000373602 TRAV39A0A0B4J263 110 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 CD1AP06126 327 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 GTF2F2P13984 249 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 SSTR5P35346 364 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 GPR176Q14439 515 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 NSUN5P1Q3KNT7 163 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 SLC22A6Q4U2R8 563 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 SLC16A12Q6ZSM3 486 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 AHSA2Q719I0 299 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 STX19Q8N4C7 294 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 LEAP2Q969E1 77 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 RPEQ96AT9 228 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 CITED2Q99967 270 aaPredicted RBP17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 FKBP14Q9NWM8 211 aa17.33■□□□□ 0.36
CCDC28B-201ENST00000373602 PNMA8CA0A1B0GUJ8 204 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 A0A1W2PPK0 400 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 TMEM30CPA0ZSE6 113 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM90A18PA6NE21 464 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM90A16PA6NEW6 464 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM90A20PA6NIJ5 464 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM90A9PA6NNJ1 464 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 ADARB2-AS1A8MUL3 147 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM90A12PA8MX19 464 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM90A5PA8MXJ8 464 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 MYL12BO14950 172 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 IGHV3-7P01780 117 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 AMY1AP04745 511 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 AMY2AP04746 511 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM90A15PP0C7V4 464 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM90A13PP0C7W8 464 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM90A14PP0C7W9 464 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 FAM90A24PP0C7X0 464 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 GZMHP20718 246 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 WNT4P56705 351 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 DOC2BQ14184 412 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 LTC4SQ16873 150 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 ATAD3CQ5T2N8 411 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 CDH26Q8IXH8 852 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 NANOGP1Q8N7R0 232 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 BPIFB6Q8NFQ5 453 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 TOMM40LQ969M1 308 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 MUL1Q969V5 352 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 DERL3Q96Q80 235 aa17.32■□□□□ 0.36
CCDC28B-201ENST00000373602 CELP19835 753 aa17.31■□□□□ 0.36
CCDC28B-201ENST00000373602 ABCA11PQ4W5N1 156 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms