RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 C19orf57Q0VDD7 668 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 GGTLC2Q14390 218 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 SPINK9Q5DT21 86 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 SPINK14Q6IE38 97 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 OR5A2Q8NGI9 324 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 DTD1Q8TEA8 209 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 R3HDM4Q96D70 268 aa10.03□□□□□ -0.8
PTPRF-203ENST00000372407 PNLIPP16233 465 aa10.02□□□□□ -0.8
PTPRF-203ENST00000372407 CRISP2P16562 243 aa10.02□□□□□ -0.8
PTPRF-203ENST00000372407 SULT1A1P50225 295 aa10.02□□□□□ -0.8
PTPRF-203ENST00000372407 ZNF154Q13106 437 aa10.02□□□□□ -0.8
PTPRF-203ENST00000372407 CLPPQ16740 277 aaPredicted RBP10.02□□□□□ -0.8
PTPRF-203ENST00000372407 TMEM65Q6PI78 240 aa10.02□□□□□ -0.8
PTPRF-203ENST00000372407 SLC16A13Q7RTY0 426 aa10.02□□□□□ -0.8
PTPRF-203ENST00000372407 HOGA1Q86XE5 327 aa10.02□□□□□ -0.8
PTPRF-203ENST00000372407 PRO1933Q9H354 126 aa10.02□□□□□ -0.8
PTPRF-203ENST00000372407 ZNF236Q9UL36 1845 aa10.02□□□□□ -0.8
PTPRF-203ENST00000372407 MFNGO00587 321 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 OR2J3O76001 311 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 HLA-DQB1P01920 261 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 CCL4P13236 92 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 HTR1DP28221 377 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 UBE2L3P68036 154 aaKnown RBP10.02□□□□□ -0.81
PTPRF-203ENST00000372407 EWSR1Q01844 656 aaKnown RBP eCLIP10.02□□□□□ -0.81
PTPRF-203ENST00000372407 TUSC5Q8IXB3 177 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 UCN2Q96RP3 112 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 RNF2Q99496 336 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 TNFSF18Q9UNG2 199 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 DTX4Q9Y2E6 619 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 ESPL1Q14674 2120 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 ELOA3CA0A087WX78 387 aaPredicted RBP10.02□□□□□ -0.81
PTPRF-203ENST00000372407 IGHV3-13P01766 116 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 IGHV3-7P01780 117 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 CCL3P10147 92 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 PEBP1P30086 187 aaKnown RBP10.02□□□□□ -0.81
PTPRF-203ENST00000372407 ZFP36L2P47974 494 aaKnown RBP10.02□□□□□ -0.81
PTPRF-203ENST00000372407 Q56UQ5 140 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 MRGPRGQ86SM5 289 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 C9orf40Q8IXQ3 194 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 LHFPL5Q8TAF8 219 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 HSD17B10Q99714 261 aaKnown RBP10.02□□□□□ -0.81
PTPRF-203ENST00000372407 GPR87Q9BY21 358 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 OR2H1Q9GZK4 316 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 PARP11Q9NR21 331 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 TECRQ9NZ01 308 aaKnown RBP10.02□□□□□ -0.81
PTPRF-203ENST00000372407 CACNA1DQ01668 2161 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 TEX50A0A1B0GTY4 177 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 OOEPA6NGQ2 149 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 CAMPP49913 170 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 PRRX1P54821 245 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 ERVS71-1P61550 626 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 NAAAQ02083 359 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 OR2M3Q8NG83 312 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 LRRC3BQ96PB8 259 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 RSRP1Q9BUV0 290 aa10.02□□□□□ -0.81
PTPRF-203ENST00000372407 NKX2-6A6NCS4 301 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 C11orf94C9JXX5 98 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 ZNF205O95201 554 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 ACTL6AO96019 429 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 TTRP02766 147 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 TUSC1Q2TAM9 212 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 OR10A7Q8NGE5 316 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 IL22RA2Q969J5 263 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 SLC7A10Q9NS82 523 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 TINAGQ9UJW2 476 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 OR2W1Q9Y3N9 320 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 ZNF253O75346 499 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 GCM2O75603 506 aaPredicted RBP10.01□□□□□ -0.81
PTPRF-203ENST00000372407 DXOO77932 396 aaKnown RBP10.01□□□□□ -0.81
PTPRF-203ENST00000372407 LIMS1P48059 325 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 NHLH1Q02575 133 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 NHLH2Q02577 135 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 SLC35E3Q7Z769 313 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 ADAD2Q8NCV1 583 aaKnown RBP10.01□□□□□ -0.81
PTPRF-203ENST00000372407 SLC26A1Q9H2B4 701 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 GPR35Q9HC97 309 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 SIRT7Q9NRC8 400 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 CA10Q9NS85 328 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 TMEM38BQ9NVV0 291 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 A0A1B0GTQ1 180 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 CEACAM3P40198 252 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 RPEL1Q2QD12 228 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 NCMAPQ5T1S8 102 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 ZBTB34Q8NCN2 500 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 OR4C5Q8NGB2 326 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 CT55Q8WUE5 264 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 MRGPRFQ96AM1 343 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 ANAPC16Q96DE5 110 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 DOK5Q9P104 306 aa10.01□□□□□ -0.81
PTPRF-203ENST00000372407 A0A1B0GU03 582 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 CBY3A6NI87 242 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 TCAPO15273 167 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 PMELP40967 661 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 KIR3DL2P43630 455 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 ZNF260Q3ZCT1 412 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 CD200R1LQ6Q8B3 271 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 ZPLD1Q8TCW7 415 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 TRAV38-1A0A0B4J264 116 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 A0A1W2PQF6 199 aa10□□□□□ -0.81
PTPRF-203ENST00000372407 FAM74A7A6NL05 159 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms