RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 OR10Z1Q8NGY1 313 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 PRR7Q8TB68 274 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 ZFAND1Q8TCF1 268 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 TOMM40LQ969M1 308 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 MOB3AQ96BX8 217 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 PLPPR2Q96GM1 343 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 HYLS1Q96M11 299 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 DYSFO75923 2080 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 KIR2DS1A0A191URI9 304 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 CCSO14618 274 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 SIAH2O43255 324 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 SFT2D2O95562 160 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 CTSDP07339 412 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-202ENST00000372405 DNASE1P24855 282 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 ECI1P42126 302 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 KIR2DS4P43632 304 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 KIR2DS1Q14954 304 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 SLC9A3R2Q15599 337 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 C9orf62Q8N4C0 152 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 CD177Q8N6Q3 437 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 OR5M8Q8NGP6 311 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 GRPEL2Q8TAA5 225 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 DHRS9Q9BPW9 319 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 RANBP3Q9H6Z4 567 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-202ENST00000372405 GCM1Q9NP62 436 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 NGBQ9NPG2 151 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 IL19Q9UHD0 177 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 MGAT4AQ9UM21 535 aa11.58□□□□□ -0.56
PTPRF-202ENST00000372405 IGKV1D-17A0A075B6S4 117 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-202ENST00000372405 E7EQL1 145 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 BET1O15155 118 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 PPYP01298 95 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 ZNF728P0DKX0 622 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 PSG2P11465 335 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 HLA-GP17693 338 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 OR3A1P47881 315 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 RAP2BP61225 183 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 SEC61A1P61619 476 aaKnown RBP11.57□□□□□ -0.56
PTPRF-202ENST00000372405 HLA-DRB3P79483 266 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 TNFAIP6P98066 277 aaPredicted RBP11.57□□□□□ -0.56
PTPRF-202ENST00000372405 TFF3Q07654 80 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 ANKRD55Q3KP44 614 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 TGIF2LYQ8IUE0 185 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 ZCCHC24Q8N2G6 241 aaKnown RBP11.57□□□□□ -0.56
PTPRF-202ENST00000372405 PHB2Q99623 299 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 ESRP2Q9H6T0 727 aaKnown RBP11.57□□□□□ -0.56
PTPRF-202ENST00000372405 MBNL3Q9NUK0 354 aaKnown RBP11.57□□□□□ -0.56
PTPRF-202ENST00000372405 RASL12Q9NYN1 266 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 ZDHHC8Q9ULC8 765 aa11.57□□□□□ -0.56
PTPRF-202ENST00000372405 C14orf166Q9Y224 244 aaKnown RBP11.57□□□□□ -0.56
PTPRF-202ENST00000372405 TUSC2O75896 110 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 GLP1RP43220 463 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 COL10A1Q03692 680 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 FAM201AQ5SY85 155 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 C11orf88Q6PI97 169 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 LDLRAD3Q86YD5 345 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 BOLLQ8N9W6 283 aaKnown RBP11.56□□□□□ -0.56
PTPRF-202ENST00000372405 CA5BP1Q8WTZ4 195 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 COQ2Q96H96 371 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 SHARPINQ9H0F6 387 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 ERRFI1Q9UJM3 462 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-202ENST00000372405 WIPI2Q9Y4P8 454 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 ARFGEF3Q5TH69 2177 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 RAI1Q7Z5J4 1906 aaPredicted RBP11.56□□□□□ -0.56
PTPRF-202ENST00000372405 IGHV3OR15-7A0A075B7D8 119 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 IGKV1D-13A0A0B4J2D9 117 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 CRYM-AS1A6NIL9 109 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 IFNL4K9M1U5 179 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 PLAUP00749 431 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 IGKV1-13P0DP09 117 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 UQCRFS1P47985 274 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 UCP3P55916 312 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 SNRPD2P62316 118 aaKnown RBP11.56□□□□□ -0.56
PTPRF-202ENST00000372405 KCTD9Q7L273 389 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 OR4A4PQ8NGN8 299 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 KIRREL1Q96J84 757 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 CABLES2Q9BTV7 478 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 GLS2Q9UI32 602 aa11.56□□□□□ -0.56
PTPRF-202ENST00000372405 TRBV6-7A0A0A0MS04 114 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 POM121CA8CG34 1229 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 C17orf100A8MU93 164 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 ZNF737O75373 536 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 TK1P04183 234 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 ADH4P08319 380 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 PRDX2P32119 198 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 KCNJ3P48549 501 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 PIGPP57054 158 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 AESQ08117 197 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 SRSF4Q08170 494 aaKnown RBP11.55□□□□□ -0.56
PTPRF-202ENST00000372405 OR11L1Q8NGX0 322 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 UBALD1Q8TB05 177 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 RSRP1Q9BUV0 290 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 DCAF16Q9NXF7 216 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 NDRG3Q9UGV2 375 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 TRAPPC2LQ9UL33 140 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 HSPB11Q9Y547 144 aa11.55□□□□□ -0.56
PTPRF-202ENST00000372405 SPTBN1Q01082 2364 aaKnown RBP11.55□□□□□ -0.56
PTPRF-202ENST00000372405 H7C1Q1 480 aa11.54□□□□□ -0.56
PTPRF-202ENST00000372405 GNRHRP30968 328 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms