RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 ZNF880Q6PDB4 577 aa12.23□□□□□ -0.45
CD48-201ENST00000368045 DBX2Q6ZNG2 339 aa12.23□□□□□ -0.45
CD48-201ENST00000368045 PLPPR1Q8TBJ4 325 aa12.23□□□□□ -0.45
CD48-201ENST00000368045 MALSU1Q96EH3 234 aa12.23□□□□□ -0.45
CD48-201ENST00000368045 SIGLEC12Q96PQ1 595 aa12.23□□□□□ -0.45
CD48-201ENST00000368045 CDX2Q99626 313 aaPredicted RBP12.23□□□□□ -0.45
CD48-201ENST00000368045 CABLES2Q9BTV7 478 aa12.23□□□□□ -0.45
CD48-201ENST00000368045 GPR87Q9BY21 358 aa12.23□□□□□ -0.45
CD48-201ENST00000368045 PKIBQ9C010 78 aa12.23□□□□□ -0.45
CD48-201ENST00000368045 IGKV1-6A0A0C4DH72 117 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 C21orf140B9A014 251 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 PDGFBP01127 241 aaPredicted RBP12.22□□□□□ -0.45
CD48-201ENST00000368045 HOXB1P14653 301 aaPredicted RBP12.22□□□□□ -0.45
CD48-201ENST00000368045 AGAP20933 346 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 PPP1CCP36873 323 aaKnown RBP12.22□□□□□ -0.45
CD48-201ENST00000368045 MEOX2P50222 304 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 NOVA1P51513 510 aaKnown RBP12.22□□□□□ -0.45
CD48-201ENST00000368045 GNG3P63215 75 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 AKIRIN2Q53H80 203 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 CXorf66Q5JRM2 361 aaPredicted RBP12.22□□□□□ -0.45
CD48-201ENST00000368045 ETV3LQ6ZN32 361 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 BATF2Q8N1L9 274 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 IL22RA1Q8N6P7 574 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 SUMF2Q8NBJ7 301 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 MRPL30Q8TCC3 161 aaKnown RBP12.22□□□□□ -0.45
CD48-201ENST00000368045 PRRG4Q9BZD6 226 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 CCL28Q9NRJ3 127 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 CRIM1Q9NZV1 1036 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 KIAA1456Q9P272 454 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 FBXO7Q9Y3I1 522 aa12.22□□□□□ -0.45
CD48-201ENST00000368045 NCKAP5O14513 1909 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 A0A1B0GU03 582 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 NPIPB11E5RHQ5 1161 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 PROB1E7EW31 1015 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 PGLYRP1O75594 196 aaPredicted RBP12.21□□□□□ -0.45
CD48-201ENST00000368045 DFFBO76075 338 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 JMJD7P0C870 316 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 F2RP25116 425 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 MAS1LP35410 378 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 HLA-DRB3P79483 266 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 TSC22D1Q15714 1073 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 C9orf135Q5VTT2 229 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 TCEAL6Q6IPX3 200 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 PCSK4Q6UW60 755 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 MOB1BQ7L9L4 216 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 C1orf210Q8IVY1 113 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 ZFP82Q8N141 532 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 SUMF1Q8NBK3 374 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 C2CD4CQ8TF44 421 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 TMEM171Q8WVE6 324 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 HS3ST6Q96QI5 342 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 TTTY12Q9BZ98 90 aa12.21□□□□□ -0.45
CD48-201ENST00000368045 RBFOX3A6NFN3 312 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 WRBO00258 174 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 HSD17B6O14756 317 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 DEGS1O15121 323 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 SYNGR1O43759 233 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 F10P00742 488 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 S100A8P05109 93 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 CELA3AP09093 270 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 APLNRP35414 380 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 OR1C1Q15619 314 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 SOHLH1Q5JUK2 328 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 ZNF324BQ6AW86 544 aaPredicted RBP12.2□□□□□ -0.46
CD48-201ENST00000368045 MCEMP1Q8IX19 187 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 H1FOOQ8IZA3 346 aaPredicted RBP12.2□□□□□ -0.46
CD48-201ENST00000368045 OR5C1Q8NGR4 320 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 ATP5SQ99766 215 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 GLRX2Q9NS18 164 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 OR2W1Q9Y3N9 320 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 ZNF503-AS2A6NEH8 195 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 C5orf52A6NGY3 159 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 C9orf172C9J069 976 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 UBE2CO00762 179 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 HBE1P02100 147 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 CCL2P13500 99 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 RAB5AP20339 215 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 MDH2P40926 338 aaKnown RBP12.2□□□□□ -0.46
CD48-201ENST00000368045 AKR1C3P42330 323 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 SULT1A1P50225 295 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 DYNLT3P51808 116 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 RAB2AP61019 212 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 HIKESHIQ53FT3 197 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 SP5Q6BEB4 398 aaPredicted RBP12.2□□□□□ -0.46
CD48-201ENST00000368045 SPSB3Q6PJ21 355 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 FAM58AQ8N1B3 248 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 TMEM251Q8N6I4 163 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 OR10J5Q8NHC4 309 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 CD300LFQ8TDQ1 290 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 NANOS1Q8WY41 292 aaKnown RBP12.2□□□□□ -0.46
CD48-201ENST00000368045 IP6K3Q96PC2 410 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 RAB40CQ96S21 281 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 MAGT1Q9H0U3 335 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 ZNF552Q9H707 407 aaPredicted RBP12.2□□□□□ -0.46
CD48-201ENST00000368045 TREM2Q9NZC2 230 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 IL36RNQ9UBH0 155 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 RNF115Q9Y4L5 304 aa12.2□□□□□ -0.46
CD48-201ENST00000368045 TNRC6AQ8NDV7 1962 aaKnown RBP12.2□□□□□ -0.46
CD48-201ENST00000368045 SHANK1Q9Y566 2161 aa12.19□□□□□ -0.46
CD48-201ENST00000368045 COL27A1Q8IZC6 1860 aaPredicted RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms