RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CACNG6Q9BXT2 260 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 EXO5Q9H790 373 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF71Q9NQZ8 489 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 OR5AC2Q9NZP5 309 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SHPKQ9UHJ6 478 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 AK3Q9UIJ7 227 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RCL1Q9Y2P8 373 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 WIPI2Q9Y4P8 454 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CACNA1BQ00975 2339 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CREBBPQ92793 2442 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 USP24Q9UPU5 2620 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 IGLV3-9A0A075B6K5 115 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RFPL4AA6NLU0 287 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 IQCF6A8MYZ5 107 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RFPL4AL1F8VTS6 287 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SLC33A1O00400 549 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 PDCD5O14737 125 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 GEMIN2O14893 280 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 TFECO14948 347 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 EIF1BO60739 113 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 SLC22A5O76082 557 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SIX6O95475 246 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 FSTL3O95633 263 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RLN2P04090 185 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 FCGR2AP12318 317 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ERP29P30040 261 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 MPV17P39210 176 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF41P51814 821 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 P2RX3P56373 397 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RAB25P57735 213 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SNRPD2P62316 118 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 SSBP2P81877 361 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 NDUFA5Q16718 116 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 PCGF3Q3KNV8 242 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CDNFQ49AH0 187 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 MIDNQ504T8 468 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 TMEM69Q5SWH9 247 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 TMEM244Q5VVB8 128 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SHEQ5VZ18 495 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 INO80CQ6PI98 192 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 ATRAIDQ6UW56 229 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 GLIPR1L1Q6UWM5 242 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CLEC18BQ6UXF7 455 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF704Q6ZNC4 412 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF497Q6ZNH5 498 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SSX7Q7RTT5 188 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 C6orf201Q7Z4U5 140 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ANGPTL5Q86XS5 388 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 KCNRGQ8N5I3 272 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ASCC1Q8N9N2 400 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF439Q8NDP4 499 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 AKR7LQ8NHP1 331 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ANGPTL6Q8NI99 470 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF596Q8TC21 504 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF431Q8TF32 576 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 PP6455Q8WZ26 134 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 DDB2Q92466 427 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CPNE4Q96A23 557 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 THOC3Q96J01 351 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 FAM210AQ96ND0 272 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ZNF251Q9BRH9 671 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 TEX12Q9BXU0 123 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 DEFB126Q9BYW3 111 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 NMES1Q9C002 83 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SLITRK2Q9H156 845 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 OR10A4Q9H209 315 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 TMPRSS5Q9H3S3 457 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 KLRF1Q9NZS2 232 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SCP2D1Q9UJQ7 156 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 PADI1Q9ULC6 663 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 DHDHQ9UQ10 334 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 STARD10Q9Y365 291 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 SLC25A15Q9Y619 301 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 RFNGQ9Y644 331 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CACNA1DQ01668 2161 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 USF3Q68DE3 2245 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 IGHV1-18A0A0C4DH31 117 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 CBY3A6NI87 242 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 NPIPA5E9PKD4 350 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 M0R135 149 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 PPIHO43447 177 aaKnown RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 SPRY1O43609 319 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 SYNGR1O43759 233 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 PRAF2O60831 178 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 ZNF737O75373 536 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 DUS4LO95620 317 aaKnown RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 ECDO95905 644 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 CLEC3BP05452 202 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 KITLGP21583 273 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 ZNF93P35789 620 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 TMED10P49755 219 aaKnown RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 ATP1B3P54709 279 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 DLX6P56179 175 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 RND3P61587 244 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 PITPNAQ00169 270 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 OC90Q02509 493 aaPredicted RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 AIMP2Q13155 320 aaKnown RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 RBM39Q14498 530 aaKnown RBP1.91□□□□□ -2.1
VPS54-202ENST00000354504 HMGN3Q15651 99 aa1.91□□□□□ -2.1
VPS54-202ENST00000354504 CEACAM16Q2WEN9 425 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms