RNA–Protein interactions for RNA: ENST00000345865.6

UPF3B-202, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3B, Length 2,335 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-202ENST00000345865 PARP11Q9NR21 331 aa13.15□□□□□ -0.3
UPF3B-202ENST00000345865 POMT1Q9Y6A1 747 aa13.15□□□□□ -0.3
UPF3B-202ENST00000345865 EP300Q09472 2414 aaPredicted RBP13.15□□□□□ -0.3
UPF3B-202ENST00000345865 OR5B21A6NL26 309 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 ZNF14P17017 642 aaPredicted RBP13.14□□□□□ -0.31
UPF3B-202ENST00000345865 TNFSF10P50591 281 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 ERVS71-1P61550 626 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 RND3P61587 244 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 IL24Q13007 206 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 GPR157Q5UAW9 335 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 FAM185AQ8N0U4 392 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 GCNT2Q8N0V5 402 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 LYPD6BQ8NI32 183 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 DLL3Q9NYJ7 618 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 UBE2J1Q9Y385 318 aaPredicted RBP13.14□□□□□ -0.31
UPF3B-202ENST00000345865 KIR2DS1A0A191URI9 304 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 NKX2-8O15522 239 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 TNFSF12O43508 249 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 CDS2O95674 445 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 KIR2DS4P43632 304 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 NPBWR1P48145 328 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 FHITP49789 147 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 POLR2GP62487 172 aaKnown RBP eCLIP13.14□□□□□ -0.31
UPF3B-202ENST00000345865 KIR2DS1Q14954 304 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 ALKBH6Q3KRA9 238 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 ZNF565Q8N9K5 539 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 SEC11CQ9BY50 192 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 SH3BGRL3Q9H299 93 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 PURGQ9UJV8 347 aaKnown RBP13.14□□□□□ -0.31
UPF3B-202ENST00000345865 GTF3C1Q12789 2109 aa13.14□□□□□ -0.31
UPF3B-202ENST00000345865 TRAV39A0A0B4J263 110 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 FAM157AC9JC47 383 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 RNASEK-C17orf49H0YIS7 233 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 CD5P06127 495 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 IGHV1-2P23083 117 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 CXorf66Q5JRM2 361 aaPredicted RBP13.13□□□□□ -0.31
UPF3B-202ENST00000345865 Q6P435 159 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 CBLN2Q8IUK8 224 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 ZNF695Q8IW36 515 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 CLRN3Q8NCR9 226 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 BOD1Q96IK1 185 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 OR2J1Q9GZK6 312 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 PLK3Q9H4B4 646 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 IGHV3-64DA0A0J9YX35 117 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 FAM24AA6NFZ4 105 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 C1QL1O75973 258 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 SLC34A2O95436 690 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 SPP1P10451 314 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 ZNF880Q6PDB4 577 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 TMEM178AQ8NBL3 297 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 GTF3AQ92664 365 aaKnown RBP13.13□□□□□ -0.31
UPF3B-202ENST00000345865 GINS3Q9BRX5 216 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 PKIBQ9C010 78 aa13.13□□□□□ -0.31
UPF3B-202ENST00000345865 OTOGLQ3ZCN5 2332 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 ATP6V1G2-DDX39BF2Z307 99 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 ADAM20O43506 726 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 SMPD2O60906 423 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 UCP1P25874 307 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 CD80P33681 288 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 F2RL1P55085 397 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 SOX8P57073 446 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 EWSR1Q01844 656 aaKnown RBP eCLIP13.12□□□□□ -0.31
UPF3B-202ENST00000345865 NMSQ5H8A3 153 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 ZNF324BQ6AW86 544 aaPredicted RBP13.12□□□□□ -0.31
UPF3B-202ENST00000345865 LINC00596Q86U02 117 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 NANOS1Q8WY41 292 aaKnown RBP13.12□□□□□ -0.31
UPF3B-202ENST00000345865 MAGT1Q9H0U3 335 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 SPACA1Q9HBV2 294 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 ZFP57Q9NU63 452 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 RFNGQ9Y644 331 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 TRBV6-6A0A0A6YYG2 114 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 IGSF23A1L1A6 192 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 PGLYRP1O75594 196 aaPredicted RBP13.12□□□□□ -0.31
UPF3B-202ENST00000345865 LYZL6O75951 148 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 DANCRP0C864 163 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 NKX2-1P43699 371 aaPredicted RBP13.12□□□□□ -0.31
UPF3B-202ENST00000345865 IDH3GP51553 393 aaPredicted RBP13.12□□□□□ -0.31
UPF3B-202ENST00000345865 SRPXP78539 464 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 ODF3L1Q8IXM7 274 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 PLPPR1Q8TBJ4 325 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 GMPPAQ96IJ6 420 aaPredicted RBP13.12□□□□□ -0.31
UPF3B-202ENST00000345865 ZNF175Q9Y473 711 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 NBEAQ8NFP9 2946 aa13.12□□□□□ -0.31
UPF3B-202ENST00000345865 MED19A0JLT2 244 aaPredicted RBP13.11□□□□□ -0.31
UPF3B-202ENST00000345865 J3QT63 122 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 TMEM50AO95807 157 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 CTXN2P0C2S0 81 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 SFTA3P0C7M3 94 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 SEC11BP0C7V7 166 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 ZNF44P15621 663 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 SELEP16581 610 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 WT1P19544 449 aaPredicted RBP13.11□□□□□ -0.31
UPF3B-202ENST00000345865 GNMTQ14749 295 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 TBC1D28Q2M2D7 210 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 KIAA2026Q5HYC2 2103 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 FAM76BQ5HYJ3 339 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 OR2C3Q8N628 320 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 HSD17B11Q8NBQ5 300 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 FDCSPQ8NFU4 85 aa13.11□□□□□ -0.31
UPF3B-202ENST00000345865 KIRREL1Q96J84 757 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 441.3 ms