RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 LIPFP07098 398 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 DVL1P1P54792 670 aaPredicted RBP18.27■□□□□ 0.52
SDC3-202ENST00000339394 ZNF273Q14593 569 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 ARL6IP1Q15041 203 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 CNPY1Q3B7I2 92 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 ZNF260Q3ZCT1 412 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 BTNL3Q6UXE8 466 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 TCF23Q7RTU1 214 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 IZUMO1Q8IYV9 350 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 NCOR1P1Q9H4R4 102 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 LPAR3Q9UBY5 353 aa18.27■□□□□ 0.52
SDC3-202ENST00000339394 ELF5Q9UKW6 265 aaPredicted RBP18.27■□□□□ 0.52
SDC3-202ENST00000339394 A0A0G2JMP0 313 aa18.26■□□□□ 0.51
SDC3-202ENST00000339394 A0A0X1KG70 313 aa18.26■□□□□ 0.51
SDC3-202ENST00000339394 SERPINE3A8MV23 424 aa18.26■□□□□ 0.51
SDC3-202ENST00000339394 TMEM69Q5SWH9 247 aa18.26■□□□□ 0.51
SDC3-202ENST00000339394 DCAF12L2Q5VW00 463 aa18.26■□□□□ 0.51
SDC3-202ENST00000339394 OR4M2Q8NGB6 313 aa18.26■□□□□ 0.51
SDC3-202ENST00000339394 DMRTB1Q96MA1 342 aa18.26■□□□□ 0.51
SDC3-202ENST00000339394 LINC00312Q9Y6C7 94 aa18.26■□□□□ 0.51
SDC3-202ENST00000339394 CD5LO43866 347 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 NAPSAO96009 420 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 ARF6P62330 175 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 FAHD2BQ6P2I3 314 aaPredicted RBP18.25■□□□□ 0.51
SDC3-202ENST00000339394 ZNF565Q8N9K5 539 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 OR13A1Q8NGR1 328 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 OR4K15Q8NH41 348 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 MRPL30Q8TCC3 161 aaKnown RBP18.25■□□□□ 0.51
SDC3-202ENST00000339394 CCDC107Q8WV48 283 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 CORO2AQ92828 525 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 FAHD2AQ96GK7 314 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 HDHD3Q9BSH5 251 aaPredicted RBP18.25■□□□□ 0.51
SDC3-202ENST00000339394 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP18.25■□□□□ 0.51
SDC3-202ENST00000339394 OR6C3Q9NZP0 311 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 ARHGAP32A7KAX9 2087 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 TRGV10A0A0A0MS01 117 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 TRAV39A0A0B4J263 110 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 TMEM235A6NFC5 223 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 GSTP1P09211 210 aaKnown RBP18.25■□□□□ 0.51
SDC3-202ENST00000339394 CCL3L1P16619 93 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 GATA3P23771 443 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 PAX8Q06710 450 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 HACD4Q5VWC8 232 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 TRAPPC6BQ86SZ2 158 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 CMSS1Q9BQ75 279 aaKnown RBP18.25■□□□□ 0.51
SDC3-202ENST00000339394 ONECUT1Q9UBC0 465 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 EXTL2Q9UBQ6 330 aa18.25■□□□□ 0.51
SDC3-202ENST00000339394 UBE2J1Q9Y385 318 aaPredicted RBP18.25■□□□□ 0.51
SDC3-202ENST00000339394 ABCA1O95477 2261 aa18.24■□□□□ 0.51
SDC3-202ENST00000339394 YLPM1P49750 1951 aaKnown RBP18.24■□□□□ 0.51
SDC3-202ENST00000339394 TAS2R20P59543 309 aa18.24■□□□□ 0.51
SDC3-202ENST00000339394 MRGPRDQ8TDS7 321 aa18.24■□□□□ 0.51
SDC3-202ENST00000339394 ZNF714Q96N38 554 aa18.24■□□□□ 0.51
SDC3-202ENST00000339394 RIMS4Q9H426 269 aaPredicted RBP18.24■□□□□ 0.51
SDC3-202ENST00000339394 AUNIPQ9H7T9 357 aa18.24■□□□□ 0.51
SDC3-202ENST00000339394 C12orf4Q9NQ89 552 aa18.24■□□□□ 0.51
SDC3-202ENST00000339394 ADAM30Q9UKF2 790 aa18.24■□□□□ 0.51
SDC3-202ENST00000339394 TRAPPC2LQ9UL33 140 aa18.24■□□□□ 0.51
SDC3-202ENST00000339394 MRPS7Q9Y2R9 242 aaKnown RBP18.24■□□□□ 0.51
SDC3-202ENST00000339394 A0A1W2PPH5 198 aa18.23■□□□□ 0.51
SDC3-202ENST00000339394 CD3GP09693 182 aa18.23■□□□□ 0.51
SDC3-202ENST00000339394 ZNF728P0DKX0 622 aa18.23■□□□□ 0.51
SDC3-202ENST00000339394 RCC1P18754 421 aaPredicted RBP18.23■□□□□ 0.51
SDC3-202ENST00000339394 TALDO1P37837 337 aa18.23■□□□□ 0.51
SDC3-202ENST00000339394 GLP1RP43220 463 aa18.23■□□□□ 0.51
SDC3-202ENST00000339394 MRPS15P82914 257 aaKnown RBP18.23■□□□□ 0.51
SDC3-202ENST00000339394 MADCAM1Q13477 382 aa18.23■□□□□ 0.51
SDC3-202ENST00000339394 ARFRP1Q13795 201 aa18.23■□□□□ 0.51
SDC3-202ENST00000339394 CR1LQ2VPA4 569 aa18.23■□□□□ 0.51
SDC3-202ENST00000339394 CNIH2Q6PI25 160 aa18.23■□□□□ 0.51
SDC3-202ENST00000339394 Q6ZPA2 131 aa18.23■□□□□ 0.51
SDC3-202ENST00000339394 CHMP1AQ9HD42 196 aaPredicted RBP18.23■□□□□ 0.51
SDC3-202ENST00000339394 LY6G6DO95868 133 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 HLA-DQB1P01920 261 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 MELTFP08582 738 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 CGB3P0DN86 165 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 CGB7P0DN87 165 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 PTHLHP12272 177 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 TNFSF8P32971 234 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 MNDAP41218 407 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 DLX6P56179 175 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 ERVFRD-1P60508 538 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 C11orf42Q8N5U0 333 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 DIRAS2Q96HU8 199 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 C7orf69Q9H7B7 122 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 MBNL3Q9NUK0 354 aaKnown RBP18.22■□□□□ 0.51
SDC3-202ENST00000339394 KPTNQ9Y664 436 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 DOCK11Q5JSL3 2073 aa18.22■□□□□ 0.51
SDC3-202ENST00000339394 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.22■□□□□ 0.51
SDC3-202ENST00000339394 GZMHP20718 246 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 PNLIPRP3Q17RR3 467 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 KIR3DL3Q8N743 410 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 Q8N7P7 452 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 NUDCD2Q8WVJ2 157 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 WDFY2Q96P53 400 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 TMPRSS13Q9BYE2 586 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 TAS2R3Q9NYW6 316 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 KCNS2Q9ULS6 477 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 TRBV6-6A0A0A6YYG2 114 aa18.21■□□□□ 0.51
SDC3-202ENST00000339394 M0R1W7 72 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms