RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 GALNSP34059 522 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 LTBRP36941 435 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 TDRG1Q3Y452 100 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 ZNF787Q6DD87 383 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 MYPOPQ86VE0 399 aaPredicted RBP11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 IL22RA1Q8N6P7 574 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 MOB1AQ9H8S9 216 aa11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 MRPS18CQ9Y3D5 142 aaKnown RBP11.62□□□□□ -0.55
CCDC88C-201ENST00000331194 TRDCB7Z8K6 153 aa11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 BCL2P10415 239 aa11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 SNIP1Q8TAD8 396 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 RPUSD4Q96CM3 377 aaKnown RBP11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 POLR3KQ9Y2Y1 108 aaPredicted RBP11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 NCOR1O75376 2440 aa11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 PRSS47A8MTI9 375 aa11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 NUPR1O60356 82 aa11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 GCGP01275 180 aa11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 BATFQ16520 125 aa11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 RSPO1Q2MKA7 263 aaPredicted RBP11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 TBC1D26Q86UD7 250 aa11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 OR8G5Q8NG78 346 aa11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 RBKSQ9H477 322 aa11.61□□□□□ -0.55
CCDC88C-201ENST00000331194 H3BMH7 237 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 GNRHRP30968 328 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 SNAI3Q3KNW1 292 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 NEK7Q8TDX7 302 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 P4HTMQ9NXG6 502 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 ETV2O00321 342 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 CTHP32929 405 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 PAX9P55771 341 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 TAS2R30P59541 319 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 ERVFC1-1P60608 527 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 HERV-K104P61576 105 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 GNPNAT1Q96EK6 184 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 DIRC2Q96SL1 478 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 TMEM242Q9NWH2 141 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 KLHL13Q9P2N7 655 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 ABCA7Q8IZY2 2146 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 TNFRSF10CO14798 259 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 TGOLN2O43493 480 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 IGHG1P01857 330 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 EXT1Q16394 746 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 SELENOHQ8IZQ5 122 aaKnown RBP11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 TMEM256Q8N2U0 113 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 TMEM234Q8WY98 164 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 MOB3AQ96BX8 217 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 MRGPRX1Q96LB2 322 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 ZNF385AQ96PM9 386 aaKnown RBP11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 SMIM7Q9BQ49 75 aa11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 AURKAIP1Q9NWT8 199 aaPredicted RBP11.6□□□□□ -0.55
CCDC88C-201ENST00000331194 KIR2DS5A0A0G2JLQ3 304 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 A0A0G2JNG1 304 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 PPP5D1E7EU14 171 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 KIR2DS3K7RE56 304 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 DHRS3O75911 302 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 HBE1P02100 147 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 LINC00614P0C842 121 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 IRF2P14316 349 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 SELEP16581 610 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 GALR1P47211 349 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 KIR2DS5Q14953 304 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 SLC25A26Q70HW3 274 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 OR5L2Q8NGL0 311 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 SIGLEC12Q96PQ1 595 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 TMEM222Q9H0R3 208 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 SLC7A10Q9NS82 523 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 CISD1Q9NZ45 108 aaKnown RBP11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 MYOTQ9UBF9 498 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 TTC28Q96AY4 2481 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 IGKV3D-11A0A0A0MRZ8 115 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 IGKV1-12A0A0C4DH73 117 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 PPYP01298 95 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 IGKV1D-12P01611 117 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 RPLP1P05386 114 aaKnown RBP11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 RPS18P62269 152 aaKnown RBP11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 PNRC1Q12796 327 aaPredicted RBP11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 TESK1Q15569 626 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 SLC25A47Q6Q0C1 308 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 Q6ZS52 159 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 MAML2Q8IZL2 1156 aaPredicted RBP11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 OR51G1Q8NGK1 321 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 PLPPR1Q8TBJ4 325 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 RNASE8Q8TDE3 154 aaKnown RBP11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 RLN3Q8WXF3 142 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 FAM131CQ96AQ9 280 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 ZPBPQ9BS86 351 aa11.59□□□□□ -0.55
CCDC88C-201ENST00000331194 FER1L5A0AVI2 2057 aa11.58□□□□□ -0.55
CCDC88C-201ENST00000331194 LRRC3CA6NJW4 275 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 TRAF3IP2O43734 574 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 POU2F2P09086 479 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 CEACAM1P13688 526 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 TFPI2P48307 235 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF133P52736 654 aaPredicted RBP11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 MLF1P58340 268 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 DCAF10Q5QP82 559 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 PHYHD1Q5SRE7 291 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 ZNF774Q6NX45 483 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 GATAD1Q8WUU5 269 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 DDIT4LQ96D03 193 aa11.58□□□□□ -0.56
CCDC88C-201ENST00000331194 CCDC74BQ96LY2 380 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms