RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 TMED3Q9Y3Q3 217 aa13.78□□□□□ -0.2
USHBP1-202ENST00000324554 CEP250Q9BV73 2442 aa13.77□□□□□ -0.2
USHBP1-202ENST00000324554 GVINP1Q7Z2Y8 2422 aa13.77□□□□□ -0.2
USHBP1-202ENST00000324554 AKAP13Q12802 2813 aa13.77□□□□□ -0.21
USHBP1-202ENST00000324554 C3orf85A0A1B0GTC6 90 aa13.77□□□□□ -0.21
USHBP1-202ENST00000324554 ARGFXA6NJG6 315 aa13.77□□□□□ -0.21
USHBP1-202ENST00000324554 M0R036 132 aa13.77□□□□□ -0.21
USHBP1-202ENST00000324554 MPPED1O15442 326 aa13.77□□□□□ -0.21
USHBP1-202ENST00000324554 ACAA1P09110 424 aaPredicted RBP13.77□□□□□ -0.21
USHBP1-202ENST00000324554 MAGEA5P43359 124 aa13.77□□□□□ -0.21
USHBP1-202ENST00000324554 GPM6AP51674 278 aa13.77□□□□□ -0.21
USHBP1-202ENST00000324554 EWSR1Q01844 656 aaKnown RBP eCLIP13.77□□□□□ -0.21
USHBP1-202ENST00000324554 TMEM182Q6ZP80 229 aaPredicted RBP13.77□□□□□ -0.21
USHBP1-202ENST00000324554 GPHA2Q96T91 129 aa13.77□□□□□ -0.21
USHBP1-202ENST00000324554 COL25A1Q9BXS0 654 aaPredicted RBP13.77□□□□□ -0.21
USHBP1-202ENST00000324554 C11orf1Q9H5F2 150 aa13.77□□□□□ -0.21
USHBP1-202ENST00000324554 PLSCR2Q9NRY7 297 aa13.77□□□□□ -0.21
USHBP1-202ENST00000324554 FBXO9Q9UK97 447 aaPredicted RBP13.77□□□□□ -0.21
USHBP1-202ENST00000324554 A0A1W2PPH5 198 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 A6NLC8 198 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 FAM166BA8MTA8 275 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 GNRHRP30968 328 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 Q6ZS49 121 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 TTTY12Q9BZ98 90 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 A0A1W2PPE3 182 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 FAM24AA6NFZ4 105 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 UMAD1C9J7I0 102 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 NKX2-8O15522 239 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 FGF12P61328 243 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 MRPL21Q7Z2W9 205 aaKnown RBP13.76□□□□□ -0.21
USHBP1-202ENST00000324554 ZDHHC23Q8IYP9 409 aa13.76□□□□□ -0.21
USHBP1-202ENST00000324554 SPENQ96T58 3664 aaKnown RBP13.76□□□□□ -0.21
USHBP1-202ENST00000324554 C5orf52A6NGY3 159 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 C1orf196B1AJZ1 125 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 K7N7A8 449 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 SYNGR4O95473 234 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 NAPSAO96009 420 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 MT-ND4LP03901 98 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 COX5BP10606 129 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 CBR1P16152 277 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 POLR2GP62487 172 aaKnown RBP eCLIP13.75□□□□□ -0.21
USHBP1-202ENST00000324554 CLINT1Q14677 625 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 GNMTQ14749 295 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 OR1C1Q15619 314 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 CEACAM21Q3KPI0 293 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 SAXO1Q8IYX7 474 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 FAM213BQ8TBF2 198 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 APOBEC3DQ96AK3 386 aaPredicted RBP13.75□□□□□ -0.21
USHBP1-202ENST00000324554 TMEM222Q9H0R3 208 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 Q9N2K0 584 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 MTCH1Q9NZJ7 389 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 IL36RNQ9UBH0 155 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 STRAPQ9Y3F4 350 aaKnown RBP13.75□□□□□ -0.21
USHBP1-202ENST00000324554 IGSF23A1L1A6 192 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 TRDCB7Z8K6 153 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 SS18L1O75177 396 aaPredicted RBP13.75□□□□□ -0.21
USHBP1-202ENST00000324554 RAB5CP51148 216 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 NUBP1P53384 320 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 OR2C3Q8N628 320 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 ABHD14AQ9BUJ0 271 aa13.75□□□□□ -0.21
USHBP1-202ENST00000324554 ZNF732B4DXR9 585 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 NGFP01138 241 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 ARG1P05089 322 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 OR13C7P0DN81 318 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 AGAP20933 346 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 SRSF7Q16629 238 aaKnown RBP eCLIP13.74□□□□□ -0.21
USHBP1-202ENST00000324554 RNF212Q495C1 297 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 KRBOX4Q5JUW0 171 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 RBMS3Q6XE24 437 aaKnown RBP13.74□□□□□ -0.21
USHBP1-202ENST00000324554 DPPA2Q7Z7J5 298 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 TBC1D26Q86UD7 250 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 FAM185AQ8N0U4 392 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 RARRES2Q99969 163 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 IFT22Q9H7X7 185 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 TNRC6AQ8NDV7 1962 aaKnown RBP13.74□□□□□ -0.21
USHBP1-202ENST00000324554 ZNF407Q9C0G0 2248 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 hCG_1809904A0A1W2PP81 198 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 A0A1W2PR64 198 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 A0A1W2PRV1 198 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 GPR37O15354 613 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 SCTP09683 121 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 WT1P19544 449 aaPredicted RBP13.74□□□□□ -0.21
USHBP1-202ENST00000324554 OMGP23515 440 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 B2MP61769 119 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 CCL20P78556 96 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 HERPUD1Q15011 391 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 EIF2S3LQ2VIR3 472 aaKnown RBP13.74□□□□□ -0.21
USHBP1-202ENST00000324554 TMEM251Q8N6I4 163 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 KDF1Q8NAX2 398 aaPredicted RBP13.74□□□□□ -0.21
USHBP1-202ENST00000324554 CD300LFQ8TDQ1 290 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 TMEM171Q8WVE6 324 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 APH1AQ96BI3 265 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 MAGT1Q9H0U3 335 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 SLC35B3Q9H1N7 401 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 ZNF552Q9H707 407 aaPredicted RBP13.74□□□□□ -0.21
USHBP1-202ENST00000324554 TUBA4BQ9H853 241 aa13.74□□□□□ -0.21
USHBP1-202ENST00000324554 CDRT15L2A8MXV6 281 aa13.73□□□□□ -0.21
USHBP1-202ENST00000324554 HSPB6O14558 160 aa13.73□□□□□ -0.21
USHBP1-202ENST00000324554 CDS2O95674 445 aa13.73□□□□□ -0.21
USHBP1-202ENST00000324554 TK1P04183 234 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms