RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 WBP1LQ9NX94 342 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 CA11O75493 328 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 PRF1P14222 555 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 HOXA6P31267 233 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 FABP6P51161 128 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 RAC3P60763 192 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 RND3P61587 244 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 CCDC74BQ96LY2 380 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 HSF4Q9ULV5 492 aa16.89■□□□□ 0.29
USP48-201ENST00000308271 COX19Q49B96 90 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 LINC00114Q6XXX2 140 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 Q6ZS52 159 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 MYPOPQ86VE0 399 aaPredicted RBP16.88■□□□□ 0.29
USP48-201ENST00000308271 GDF15Q99988 308 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 GREB1Q4ZG55 1949 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 OTOFQ9HC10 1997 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 FBP1P09467 338 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 AMTP48728 403 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 EGR4Q05215 589 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 PLAC9Q5JTB6 97 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 OR2I1PQ8NGU4 316 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 FER1L6-AS2Q96M78 137 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 UBE2ZQ9H832 354 aaPredicted RBP16.88■□□□□ 0.29
USP48-201ENST00000308271 TUBA4BQ9H853 241 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 AUP1Q9Y679 476 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 RPLP1P05386 114 aaKnown RBP16.88■□□□□ 0.29
USP48-201ENST00000308271 CNN1P51911 297 aaKnown RBP16.88■□□□□ 0.29
USP48-201ENST00000308271 TMEM178AQ8NBL3 297 aa16.88■□□□□ 0.29
USP48-201ENST00000308271 RPL36A-HNRNPH2H7BZ11 118 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 CLN5O75503 358 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 CYC1P08574 325 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 TIPARPQ7Z3E1 657 aaKnown RBP16.87■□□□□ 0.29
USP48-201ENST00000308271 TMEM222Q9H0R3 208 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 APC2O95996 2303 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 FGF16O43320 207 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 MYF5P13349 255 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 WIPI1Q5MNZ9 446 aaPredicted RBP16.87■□□□□ 0.29
USP48-201ENST00000308271 ETV3LQ6ZN32 361 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 SMIM21Q3B7S5 101 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 VHLLQ6RSH7 139 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 OR2W1Q9Y3N9 320 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 K7EQM0 130 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 RHOBP62745 196 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 C16orf82Q7Z2V1 217 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 DYRK2Q92630 601 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 RASL10BQ96S79 203 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 CHD5Q8TDI0 1954 aa16.87■□□□□ 0.29
USP48-201ENST00000308271 CBY3A6NI87 242 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 IL11P20809 199 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 CA5BP1Q8WTZ4 195 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 RHOVQ96L33 236 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 MPC1Q9Y5U8 109 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 ZNF729A6NN14 1252 aaPredicted RBP16.86■□□□□ 0.29
USP48-201ENST00000308271 RPEL1Q2QD12 228 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 IFI44Q8TCB0 444 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 GBF1Q92538 1859 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 GNG4P50150 75 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 REC114Q7Z4M0 266 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 RARRES2Q99969 163 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 BET1LQ9NYM9 111 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 TGIF2-C20orf24A0A0A6YYL0 155 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 PDE6DO43924 150 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 PAGE4O60829 102 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 PTTG1IPP53801 180 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 BPIFB3P59826 476 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 D2HGDHQ8N465 521 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 OR5AU1Q8NGC0 362 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 P2RX4Q99571 388 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 SLC45A2Q9UMX9 530 aa16.86■□□□□ 0.29
USP48-201ENST00000308271 GALR2O43603 387 aaPredicted RBP16.85■□□□□ 0.29
USP48-201ENST00000308271 SRD5A2P31213 254 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 UNC119Q13432 240 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 RTL8BQ17RB0 113 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 CADM4Q8NFZ8 388 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 OR1P1Q8NH06 330 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 MOB3AQ96BX8 217 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 MENTQ9BUN1 341 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 F8VVB4 439 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 F8VWA3 439 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 MDKP21741 143 aaPredicted RBP16.85■□□□□ 0.29
USP48-201ENST00000308271 FHITP49789 147 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 IGLV3-21P80748 117 aaPredicted RBP16.85■□□□□ 0.29
USP48-201ENST00000308271 ERHP84090 104 aaKnown RBP16.85■□□□□ 0.29
USP48-201ENST00000308271 C6orf15Q6UXA7 325 aaPredicted RBP16.85■□□□□ 0.29
USP48-201ENST00000308271 MS4A18H0YCH9 400 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 RBM11P57052 281 aaKnown RBP16.85■□□□□ 0.29
USP48-201ENST00000308271 MS4A18Q3C1V0 323 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 MRGPRFQ96AM1 343 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 TRIB1Q96RU8 372 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 COMMD5Q9GZQ3 224 aa16.85■□□□□ 0.29
USP48-201ENST00000308271 E9PQ18 207 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 GYPAP02724 150 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 PGA4P0DJD7 388 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 PGA5P0DJD9 388 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 SRFP11831 508 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 GLIPR1P48060 266 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 EIF3IQ13347 325 aaKnown RBP16.84■□□□□ 0.29
USP48-201ENST00000308271 COTL1Q14019 142 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 SPATA46Q5T0L3 261 aa16.84■□□□□ 0.29
USP48-201ENST00000308271 SFTPA2Q8IWL1 248 aa16.84■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms