RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CLEC18AA5D8T8 446 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 J3KRW8 73 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 SLC2A10O95528 541 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 OR5AC1P0C628 307 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 APOBEC1P41238 236 aaKnown RBP5.67□□□□□ -1.5
VPS35-201ENST00000299138 ZNF137PP52743 207 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 VASH2Q86V25 355 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 TMEM183AQ8IXX5 376 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 CNEP1R1Q8N9A8 125 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 WDR31Q8NA23 367 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 CLEC18CQ8NCF0 446 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 COL25A1Q9BXS0 654 aaPredicted RBP5.67□□□□□ -1.5
VPS35-201ENST00000299138 AAMDCQ9H7C9 122 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 ANAPC10Q9UM13 185 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 MCM3APO60318 1980 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 A0A1W2PPC1 479 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 A6NCN8 305 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 MBTPS2O43462 519 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 MOSPD3O75425 235 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 IL4P05112 153 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 DRD1P21728 446 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 HLA-DRB3P79483 266 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 ERHP84090 104 aaKnown RBP5.67□□□□□ -1.5
VPS35-201ENST00000299138 LDLRAD3Q86YD5 345 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 ATOH7Q8N100 152 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 OR8B3Q8NGG8 313 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 OR5A1Q8NGJ0 315 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 OR2Y1Q8NGV0 311 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 BADQ92934 168 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 TCTN2Q96GX1 697 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 SIGMAR1Q99720 223 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 TMED7Q9Y3B3 224 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 TRAV8-2A0A0B4J237 113 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 LOC107986453A0A1B0GWG9 222 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 FAM221AA4D161 298 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 TLCD2A6NGC4 264 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 ADAP1O75689 374 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 CD5P06127 495 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 LINC00346Q8IVM7 164 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 UBALD2Q8IYN6 164 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 CA13Q8N1Q1 262 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 SPSB1Q96BD6 273 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 KCNK15Q9H427 330 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 CHODLQ9H9P2 273 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 SLC2A4RGQ9NR83 387 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 A0A1W2PPE2 198 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 PRSS2P07478 247 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 SRP14P37108 136 aaKnown RBP5.67□□□□□ -1.5
VPS35-201ENST00000299138 JOSD1Q15040 202 aaPredicted RBP5.67□□□□□ -1.5
VPS35-201ENST00000299138 PRICKLE4Q2TBC4 344 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 PLXDC2Q6UX71 529 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 SLC35E3Q7Z769 313 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 LRTM2Q8N967 370 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 OR4D9Q8NGE8 314 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 WBP2Q969T9 261 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 MIA3Q5JRA6 1907 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 ORM1P02763 201 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 HTN1P15515 57 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 CDX1P47902 265 aaPredicted RBP5.67□□□□□ -1.5
VPS35-201ENST00000299138 KCNAB1Q14722 419 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 MARCH1Q8TCQ1 289 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 ASB16Q96NS5 453 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 P2RX4Q99571 388 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 EDA2RQ9HAV5 297 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 STARD10Q9Y365 291 aa5.67□□□□□ -1.5
VPS35-201ENST00000299138 SNURFLB1AK76 121 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 ASAH2BP0C7U1 165 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 BTF3P20290 206 aaKnown RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 CD226Q15762 336 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 NKAIN2Q5VXU1 208 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 KIRREL2Q6UWL6 708 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 PFN4Q8NHR9 129 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 GALNT14Q96FL9 552 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 Q96M85 177 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 VSTM2LQ96N03 204 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 ADAT1Q9BUB4 502 aaKnown RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 TBX21Q9UL17 535 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 POLDIP2Q9Y2S7 368 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 NSG1A0A0A6YYJ2 146 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 DNAL4O96015 105 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 SMIM13P0DJ93 91 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 PTGFRP43088 359 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 UCP3P55916 312 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 FZD5Q13467 585 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 ELAVL1Q15717 326 aaKnown RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 NSDHLQ15738 373 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 FAM27D1Q5T7N8 215 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 OR8I2Q8N0Y5 310 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 DOCK4Q8N1I0 1966 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 OR2I1PQ8NGU4 316 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 UQCR10Q9UDW1 63 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 PLXNB2O15031 1838 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 ALG1L2C9J202 215 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 PRAMEF26H0Y7S4 382 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 HSPB1P04792 205 aaKnown RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 HIST1H1DP16402 221 aaKnown RBP5.66□□□□□ -1.5
VPS35-201ENST00000299138 IL3RAP26951 378 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 HRH1P35367 487 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 MFAP4P55083 255 aa5.66□□□□□ -1.5
VPS35-201ENST00000299138 ZNF124Q15973 351 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms