RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 CLDN23Q96B33 292 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 ATP5SQ99766 215 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 SOX7Q9BT81 388 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 PILRBQ9UKJ0 227 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 DUXBA0A1W2PPF3 345 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 B4DEV8 164 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 SAP25Q8TEE9 199 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 PTX4Q96A99 478 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 BOKQ9UMX3 212 aaPredicted RBP13.45□□□□□ -0.26
SHH-201ENST00000297261 HELZP42694 1942 aaKnown RBP13.45□□□□□ -0.26
SHH-201ENST00000297261 TICRRQ7Z2Z1 1910 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 A0A087WV48 116 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 THBS3P49746 956 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 GAS1P54826 345 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 OR8G1Q15617 311 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 VAX1Q5SQQ9 334 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 ZNF774Q6NX45 483 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 MFRPQ9BY79 579 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 C12orf49Q9H741 205 aa13.45□□□□□ -0.26
SHH-201ENST00000297261 FKBP2P26885 142 aaKnown RBP13.44□□□□□ -0.26
SHH-201ENST00000297261 APCDD1LQ8NCL9 501 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 OR11L1Q8NGX0 322 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 UTP23Q9BRU9 249 aaKnown RBP13.44□□□□□ -0.26
SHH-201ENST00000297261 TMEM9BQ9NQ34 198 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 PPYP01298 95 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 SHISA5Q8N114 240 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 OR10G4Q8NGN3 311 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 OR10G9Q8NGN4 311 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 OR10G7Q8NGN6 311 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 OR1F12Q8NHA8 337 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 PRR19A6NJB7 356 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 SPINT2O43291 252 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 ASAH2BP0C7U1 165 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 IRF2P14316 349 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 CRISP2P16562 243 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 ASB10Q8WXI3 467 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 NEIL1Q96FI4 390 aaPredicted RBP13.44□□□□□ -0.26
SHH-201ENST00000297261 GNRHR2Q96P88 292 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 VAX2Q9UIW0 290 aa13.44□□□□□ -0.26
SHH-201ENST00000297261 TNFSF11O14788 317 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 MBPP02686 304 aaPredicted RBP13.43□□□□□ -0.26
SHH-201ENST00000297261 DHRS13Q6UX07 377 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 ZDHHC23Q8IYP9 409 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 ZNF596Q8TC21 504 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 M1APQ8TC57 530 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 CACFD1Q9UGQ2 172 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 A0A1W2PQM1 296 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 TGFBR3LH3BV60 316 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 ADAM11O75078 769 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 DEDDO75618 318 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 BGLAPP02818 100 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 CCKARP32238 428 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 WDR25Q64LD2 544 aaPredicted RBP13.43□□□□□ -0.26
SHH-201ENST00000297261 Q6ZN92 141 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 TBX15Q96SF7 602 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 REG4Q9BYZ8 158 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 SH3BGRL3Q9H299 93 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 GOLT1BQ9Y3E0 138 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 PLXNA2O75051 1894 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 GBF1Q92538 1859 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 TCF21O43680 179 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 PNLIPP16233 465 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 KHDC3LQ587J8 217 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 GAPTQ8N292 157 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 DUSP13Q9UII6 198 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 TERTO14746 1132 aaKnown RBP13.43□□□□□ -0.26
SHH-201ENST00000297261 FBP1P09467 338 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 SPINK9Q5DT21 86 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 VASH2Q86V25 355 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 TGIF2LXQ8IUE1 241 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 RBMXL3Q8N7X1 1067 aaKnown RBP13.43□□□□□ -0.26
SHH-201ENST00000297261 CIB3Q96Q77 187 aaPredicted RBP13.43□□□□□ -0.26
SHH-201ENST00000297261 ZNF665Q9H7R5 613 aa13.43□□□□□ -0.26
SHH-201ENST00000297261 OBSL1O75147 1896 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 ZNF729A6NN14 1252 aaPredicted RBP13.42□□□□□ -0.26
SHH-201ENST00000297261 NPIPB9F8W1W9 429 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 SYNGR2O43760 224 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 TRGC1P0CF51 173 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 SUMO3P55854 103 aaPredicted RBP13.42□□□□□ -0.26
SHH-201ENST00000297261 CD81P60033 236 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 TECTBQ96PL2 329 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 RIMS4Q9H426 269 aaPredicted RBP13.42□□□□□ -0.26
SHH-201ENST00000297261 TIMM8AO60220 97 aaPredicted RBP13.42□□□□□ -0.26
SHH-201ENST00000297261 CDS2O95674 445 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 OR10J4P0C629 311 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 PRF1P14222 555 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 CLDN15P56746 228 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 RND3P61587 244 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 VHLLQ6RSH7 139 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 ZNF573Q86YE8 665 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 TMEM252Q8N6L7 170 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 VN1R17PQ8TDU5 208 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 DENND4CQ5VZ89 1909 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 K7ESF4 209 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 ZNF32P17041 273 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 C1orf100Q5SVJ3 147 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 NUFIP2Q7Z417 695 aaKnown RBP13.42□□□□□ -0.26
SHH-201ENST00000297261 NUP210Q8TEM1 1887 aaPredicted RBP13.42□□□□□ -0.26
SHH-201ENST00000297261 AQP3Q92482 292 aa13.42□□□□□ -0.26
SHH-201ENST00000297261 CCL28Q9NRJ3 127 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms