RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 IGKV1-13P0DP09 117 aa12.68□□□□□ -0.38
CCNF-201ENST00000293968 GLIPR1P48060 266 aa12.68□□□□□ -0.38
CCNF-201ENST00000293968 CCL7P80098 99 aa12.68□□□□□ -0.38
CCNF-201ENST00000293968 PSG4Q00888 419 aa12.68□□□□□ -0.38
CCNF-201ENST00000293968 SRYQ05066 204 aa12.68□□□□□ -0.38
CCNF-201ENST00000293968 A0A087X0M5 115 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 TRAV39A0A0B4J263 110 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 A0A1B0GX30 115 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 IGLV3-1P01715 115 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 MYPOPQ86VE0 399 aaPredicted RBP12.67□□□□□ -0.38
CCNF-201ENST00000293968 RBMXL1Q96E39 390 aaKnown RBP12.67□□□□□ -0.38
CCNF-201ENST00000293968 ATP5SQ99766 215 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 CALHM2Q9HA72 323 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 CLDND2Q8NHS1 167 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 FOXD3Q9UJU5 478 aaPredicted RBP12.67□□□□□ -0.38
CCNF-201ENST00000293968 COL4A2P08572 1712 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 HSPB1P04792 205 aaKnown RBP12.67□□□□□ -0.38
CCNF-201ENST00000293968 CD63P08962 238 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 LBX1P52954 281 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 WDR25Q64LD2 544 aaPredicted RBP12.67□□□□□ -0.38
CCNF-201ENST00000293968 WDR74Q6RFH5 385 aaPredicted RBP12.67□□□□□ -0.38
CCNF-201ENST00000293968 FOXB1Q99853 325 aa12.67□□□□□ -0.38
CCNF-201ENST00000293968 ZNF816-ZNF321PA0A0X1KG74 233 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 VDAC1P21796 283 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 RAB30Q15771 203 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 SMRP1Q8NCR6 262 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 OR56B2PQ8NGI1 322 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 FGFBP3Q8TAT2 258 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 RPUSD4Q96CM3 377 aaKnown RBP12.66□□□□□ -0.38
CCNF-201ENST00000293968 ADAMTS9Q9P2N4 1935 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 IGHV3-64DA0A0J9YX35 117 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 CLDN34H7C241 214 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 SYNGR3O43761 229 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 SSR4P51571 173 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 TMEM211Q6ICI0 200 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 OR1K1Q8NGR3 316 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 ZNF845Q96IR2 970 aaPredicted RBP12.66□□□□□ -0.38
CCNF-201ENST00000293968 CCDC74BQ96LY2 380 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 SMDT1Q9H4I9 107 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 OCIAD1Q9NX40 245 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 LOC102725191A0A1B0GVB3 256 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 ZNF506Q5JVG8 444 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 ZIC4Q8N9L1 334 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 TMEM38BQ9NVV0 291 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 CD300LBA8K4G0 201 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 ETV2O00321 342 aaPredicted RBP12.66□□□□□ -0.38
CCNF-201ENST00000293968 OTX1P32242 354 aaPredicted RBP12.66□□□□□ -0.38
CCNF-201ENST00000293968 RPS16P62249 146 aaKnown RBP12.66□□□□□ -0.38
CCNF-201ENST00000293968 OR8G2PQ6IF36 304 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 FAM185AQ8N0U4 392 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 HIST1H2AAQ96QV6 131 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 VSIRQ9H7M9 311 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 PPP1R3CQ9UQK1 317 aa12.66□□□□□ -0.38
CCNF-201ENST00000293968 PTBP3O95758 552 aaKnown RBP12.65□□□□□ -0.38
CCNF-201ENST00000293968 IDH3GP51553 393 aaPredicted RBP12.65□□□□□ -0.38
CCNF-201ENST00000293968 DSCR4P56555 118 aaPredicted RBP12.65□□□□□ -0.38
CCNF-201ENST00000293968 SPANXN5Q5MJ07 72 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 CARFQ8N187 725 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 HIST3H2BBQ8N257 126 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 ZNF488Q96MN9 340 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 SSX3Q99909 188 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 SMOC1Q9H4F8 434 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 DFFBO76075 338 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 LIFP15018 202 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 FKBP2P26885 142 aaKnown RBP12.65□□□□□ -0.38
CCNF-201ENST00000293968 UCP3P55916 312 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 TAS2R30P59541 319 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 FADS6Q8N9I5 356 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 HS3ST6Q96QI5 342 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 SIRT7Q9NRC8 400 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 RPRMQ9NS64 109 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 LAMP3Q9UQV4 416 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 R4GN57 208 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 CFAP54Q96N23 3096 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 IGLV3-32A0A0A0MS00 114 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 SLC22A20A6NK97 555 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 TRAPPC2LH3BP13 241 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 H3F3AP84243 136 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 CLN3Q13286 438 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 EIF3IQ13347 325 aaKnown RBP12.65□□□□□ -0.38
CCNF-201ENST00000293968 Q6ZPA2 131 aa12.65□□□□□ -0.38
CCNF-201ENST00000293968 MRPL21Q7Z2W9 205 aaKnown RBP12.65□□□□□ -0.38
CCNF-201ENST00000293968 IGLV3-12A0A075B6K2 115 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 ZIC3O60481 467 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 CRYGSP22914 178 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 ERVS71-1P61550 626 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 TCEAL6Q6IPX3 200 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 UNQ6494/PRO21346Q6UXR6 183 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 SLC35E3Q7Z769 313 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 SMIM7Q9BQ49 75 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 OR2H1Q9GZK4 316 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 CACNG5Q9UF02 275 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 ERRFI1Q9UJM3 462 aaPredicted RBP12.64□□□□□ -0.39
CCNF-201ENST00000293968 ZNF407Q9C0G0 2248 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 PSG2P11465 335 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 HIST1H1BP16401 226 aaKnown RBP12.64□□□□□ -0.39
CCNF-201ENST00000293968 BEND4Q6ZU67 534 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 RPS19BP1Q86WX3 136 aaKnown RBP12.64□□□□□ -0.39
CCNF-201ENST00000293968 ABHD5Q8WTS1 349 aa12.64□□□□□ -0.39
CCNF-201ENST00000293968 RPL36A-HNRNPH2H7BZ11 118 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms