RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 FAM213BQ8TBF2 198 aa8.91□□□□□ -0.98
UPF3B-201ENST00000276201 RTN4IP1Q8WWV3 396 aaPredicted RBP8.91□□□□□ -0.98
UPF3B-201ENST00000276201 DNAJA3Q96EY1 480 aa8.91□□□□□ -0.98
UPF3B-201ENST00000276201 FAM71F1Q96KD3 344 aaPredicted RBP8.91□□□□□ -0.98
UPF3B-201ENST00000276201 SH3BGRL3Q9H299 93 aa8.91□□□□□ -0.98
UPF3B-201ENST00000276201 ABI3Q9P2A4 366 aa8.91□□□□□ -0.98
UPF3B-201ENST00000276201 RCL1Q9Y2P8 373 aaKnown RBP8.91□□□□□ -0.98
UPF3B-201ENST00000276201 PUS1Q9Y606 427 aaKnown RBP eCLIP8.91□□□□□ -0.98
UPF3B-201ENST00000276201 CLEC18AA5D8T8 446 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 OR5H1A6NKK0 313 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 ZFAND5O76080 213 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 FKBP2P26885 142 aaKnown RBP8.9□□□□□ -0.98
UPF3B-201ENST00000276201 CSNK1A1P48729 337 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 FHITP49789 147 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 RND3P61587 244 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 BAXQ07812 192 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 ICAM4Q14773 271 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 CLEC18CQ8NCF0 446 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 MDS2Q8NDY4 140 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 RNASE11Q8TAA1 199 aaKnown RBP8.9□□□□□ -0.98
UPF3B-201ENST00000276201 RNASEH2CQ8TDP1 164 aaKnown RBP8.9□□□□□ -0.98
UPF3B-201ENST00000276201 SPSB1Q96BD6 273 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 MOB3AQ96BX8 217 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 LYZL4Q96KX0 146 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 SIGLEC12Q96PQ1 595 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 SPIN2AQ99865 258 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 SPIN2BQ9BPZ2 258 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 PIGQQ9BRB3 760 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 SOX7Q9BT81 388 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 PLEKHF2Q9H8W4 249 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 PLSCR2Q9NRY7 297 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 VDAC3Q9Y277 283 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 POLR1DQ9Y2S0 133 aa8.9□□□□□ -0.98
UPF3B-201ENST00000276201 GCN1Q92616 2671 aaKnown RBP8.9□□□□□ -0.98
UPF3B-201ENST00000276201 PRRC2CQ9Y520 2896 aaKnown RBP8.9□□□□□ -0.98
UPF3B-201ENST00000276201 TRAV17A0A0B4J275 112 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 MSTNO14793 375 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 PHOX2AO14813 284 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 RAMP1O60894 148 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 SCGB1D2O95969 90 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 CXCL1P09341 107 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 OR5AC1P0C628 307 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 OTX1P32242 354 aaPredicted RBP8.9□□□□□ -0.99
UPF3B-201ENST00000276201 MTCP1P56278 107 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 RNF4P78317 190 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 DLK1P80370 383 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 ZNF674Q2M3X9 581 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 ABCA11PQ4W5N1 156 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 TMEM182Q6ZP80 229 aaPredicted RBP8.9□□□□□ -0.99
UPF3B-201ENST00000276201 FAM57BQ71RH2 274 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 ZNF429Q86V71 674 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 COMMD2Q86X83 199 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 CISD2Q8N5K1 135 aaKnown RBP8.9□□□□□ -0.99
UPF3B-201ENST00000276201 OR2C3Q8N628 320 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 ZNF283Q8N7M2 679 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 CPT1CQ8TCG5 803 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 OXGR1Q96P68 337 aa8.9□□□□□ -0.99
UPF3B-201ENST00000276201 PARP12Q9H0J9 701 aaKnown RBP8.9□□□□□ -0.99
UPF3B-201ENST00000276201 SHANK1Q9Y566 2161 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 TRBV24-1A0A075B6N3 115 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 TSTD3H0UI37 97 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 J3QKU1 62 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 DVL1O14640 695 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 OR2J2O76002 312 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 ATP6V0CP27449 155 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 DDTP30046 118 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 NKX6-1P78426 367 aaPredicted RBP8.89□□□□□ -0.99
UPF3B-201ENST00000276201 PMS2P11Q13670 270 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 OR1C1Q15619 314 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 IGFBP7Q16270 282 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 SRSF7Q16629 238 aaKnown RBP eCLIP8.89□□□□□ -0.99
UPF3B-201ENST00000276201 Q6ZS49 121 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 SSX9Q7RTT3 188 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 LYZL2Q7Z4W2 148 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 OR10D4PQ8NGN7 298 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 SNRNP40Q96DI7 357 aaKnown RBP8.89□□□□□ -0.99
UPF3B-201ENST00000276201 PGAM5Q96HS1 289 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 TMEM56Q96MV1 263 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 RARRES2Q99969 163 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 NIPSNAP3BQ9BS92 247 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 HES7Q9BYE0 225 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 LIME1Q9H400 295 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 ZNF701Q9NV72 531 aaPredicted RBP8.89□□□□□ -0.99
UPF3B-201ENST00000276201 PLEKHJ1Q9NW61 149 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 IL36GQ9NZH8 169 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 MYOTQ9UBF9 498 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 TMEM56-RWDD3S4R434 201 aa8.89□□□□□ -0.99
UPF3B-201ENST00000276201 NEURL1O76050 574 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 SERPINA2P20848 420 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 FOXF1Q12946 379 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 RSU1Q15404 277 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 OR8G1Q15617 311 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 C10orf128Q5T292 105 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 SPINK14Q6IE38 97 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 SPNS3Q6ZMD2 512 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 HSD17B11Q8NBQ5 300 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 OR2G3Q8NGZ4 309 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 CLDND2Q8NHS1 167 aa8.88□□□□□ -0.99
UPF3B-201ENST00000276201 NOL4LQ96MY1 436 aaPredicted RBP8.88□□□□□ -0.99
UPF3B-201ENST00000276201 CTDSP1Q9GZU7 261 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms