RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 DUX4L6P0CJ89 424 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 DUX4L7P0CJ90 424 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 IL13RA2Q14627 380 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 ZNF146Q15072 292 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 GRK1Q15835 563 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 DUX4L9Q6RFH8 374 aaPredicted RBP13.87□□□□□ -0.19
USP4-201ENST00000265560 CLEC18BQ6UXF7 455 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 ALX4Q9H161 411 aaPredicted RBP13.87□□□□□ -0.19
USP4-201ENST00000265560 DNAJB11Q9UBS4 358 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 DUX4Q9UBX2 424 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 C13orf42A0A1B0GVH6 325 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 SIAH2O43255 324 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 TUBG1P23258 451 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 CD80P33681 288 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 Q8IYB0 196 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 CD177Q8N6Q3 437 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 ZNRF1Q8ND25 227 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 SECTM1Q8WVN6 248 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 TUBG2Q9NRH3 451 aa13.87□□□□□ -0.19
USP4-201ENST00000265560 FPR2P25090 351 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 LY6G6FQ5SQ64 297 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 LAMTOR1Q6IAA8 161 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 SPACA1Q9HBV2 294 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 OR1A1Q9P1Q5 309 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 E7EQL1 145 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 RPS23P62266 143 aaKnown RBP13.86□□□□□ -0.19
USP4-201ENST00000265560 ANKRD55Q3KP44 614 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 TMEM128Q5BJH2 165 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 SPERTQ8NA61 448 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 LILRB4Q8NHJ6 448 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 HES4Q9HCC6 221 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 GCM1Q9NP62 436 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 KIF25Q9UIL4 384 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 ERRFI1Q9UJM3 462 aaPredicted RBP13.86□□□□□ -0.19
USP4-201ENST00000265560 IGKV1D-13A0A0B4J2D9 117 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 ZNF728P0DKX0 622 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 IGKV1-13P0DP09 117 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 GLIPR1P48060 266 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 PIGPP57054 158 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 IFITM2Q01629 132 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 RBM39Q14498 530 aaKnown RBP13.86□□□□□ -0.19
USP4-201ENST00000265560 ZMYND11Q15326 602 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 DMRTC2Q8IXT2 367 aaPredicted RBP13.86□□□□□ -0.19
USP4-201ENST00000265560 RFESDQ8TAC1 157 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 TMEM246Q9BRR3 403 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 PARP12Q9H0J9 701 aaKnown RBP13.86□□□□□ -0.19
USP4-201ENST00000265560 FXYD6Q9H0Q3 95 aa13.86□□□□□ -0.19
USP4-201ENST00000265560 TEX13DA0A0J9YY54 714 aaPredicted RBP13.85□□□□□ -0.19
USP4-201ENST00000265560 SHISA9B4DS77 424 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 H3BUI4 141 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 KCNAB3O43448 404 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 PSG2P11465 335 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 LTC4SQ16873 150 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 C3orf36Q3SXR2 165 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 PEG10Q86TG7 708 aaKnown RBP13.85□□□□□ -0.19
USP4-201ENST00000265560 TLNRD1Q9H1K6 362 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 C14orf166Q9Y224 244 aaKnown RBP13.85□□□□□ -0.19
USP4-201ENST00000265560 TUBAL3A6NHL2 446 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 TNFSF12O43508 249 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 PRB1P04280 392 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 SPIN3Q5JUX0 258 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 DHRS11Q6UWP2 260 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 PDCD10Q9BUL8 212 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 KCNJ16Q9NPI9 418 aa13.85□□□□□ -0.19
USP4-201ENST00000265560 IGKV1D-17A0A075B6S4 117 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 TRDCB7Z8K6 153 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 ERVH48-1M5A8F1 160 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 PPYP01298 95 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 HOXB5P09067 269 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 GLP1RP43220 463 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 TLE1Q04724 770 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 FGFRL1Q8N441 504 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 SPICQ8N5J4 248 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 NDRG3Q9UGV2 375 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 IGHV3-7P01780 117 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 PRDX2P32119 198 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 SERPINF1P36955 418 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 CD200P41217 278 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 SMIM21Q3B7S5 101 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 LDLRAD3Q86YD5 345 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 C1orf174Q8IYL3 243 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 NUP37Q8NFH4 326 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 MRGPRDQ8TDS7 321 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 RNASE6Q93091 150 aaKnown RBP13.84□□□□□ -0.19
USP4-201ENST00000265560 PHB2Q99623 299 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 OPN4Q9UHM6 478 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 FBXO9Q9UK97 447 aaPredicted RBP13.84□□□□□ -0.19
USP4-201ENST00000265560 HSD17B6O14756 317 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 HERV-K104P61576 105 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 SORDQ00796 357 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 FIP1L1Q6UN15 594 aaKnown RBP13.84□□□□□ -0.19
USP4-201ENST00000265560 LINC00596Q86U02 117 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 MITD1Q8WV92 249 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 COQ2Q96H96 371 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 PPP1R3CQ9UQK1 317 aa13.84□□□□□ -0.19
USP4-201ENST00000265560 CHD6Q8TD26 2715 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 VPS13CQ709C8 3753 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 C5orf51A6NDU8 294 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 TK1P04183 234 aa13.83□□□□□ -0.2
USP4-201ENST00000265560 SFTPCP11686 197 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms