RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TMEM8BA6NDV4 472 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 TMEM235A6NFC5 223 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 SOX15O60248 233 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 SCGB1A1P11684 91 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 DSCR9P59020 149 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF117Q03924 483 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 EMX1Q04741 257 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 OR2F1Q13607 317 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 C10orf113Q5VZT2 155 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 RBM45Q8IUH3 476 aaKnown RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 PARP16Q8N5Y8 322 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 OR4C16Q8NGL9 310 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 PDFQ9HBH1 243 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 TECRQ9NZ01 308 aaKnown RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 GBF1Q92538 1859 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 A0A0G2JLM5 398 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 C5orf52A6NGY3 159 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 UMAD1C9J7I0 102 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF205O95201 554 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 OPN1MWP04001 364 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 ALDOCP09972 364 aaKnown RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF688P0C7X2 276 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 OPN1MW2P0DN77 364 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 OPN1MW3P0DN78 364 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 SAMD13Q5VXD3 122 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF683Q8IZ20 524 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 TMEM123Q8N131 208 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 SYS1Q8N2H4 156 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 OR1N2Q8NGR9 330 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 FAM186AA6NE01 2351 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 IGHV3OR15-7A0A075B7D8 119 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 SNURFLB1AK76 121 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 TRIM77I1YAP6 450 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 OTOSQ8NHW6 89 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 ZPLD1Q8TCW7 415 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 R3HDM4Q96D70 268 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 MAP6Q96JE9 813 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 PRR14Q9BWN1 585 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 NPFFR1Q9GZQ6 430 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 NAA60Q9H7X0 242 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 C20orf141Q9NUB4 165 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 LRP5O75197 1615 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 TMEM129A0AVI4 362 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 TMEM229AB2RXF0 380 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 VSIG10L2P0DP72 767 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 GLI4P10075 376 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 RPL35P42766 123 aaKnown RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 SIGIRRQ6IA17 410 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 ZNF383Q8NA42 475 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 HGDQ93099 445 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 SIGLEC11Q96RL6 698 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 PSORS1C1Q9UIG5 152 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 HIGD1AQ9Y241 93 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 LOC102723996A0A087X1L8 192 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 LIPFP07098 398 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 PSMB6P28072 239 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 CDX1P47902 265 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 UBE2L3P68036 154 aaKnown RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 MYPOPQ86VE0 399 aaPredicted RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 ZDHHC11Q9H8X9 412 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 PILRBQ9UKJ0 227 aa5.41□□□□□ -1.54
SCN1A-217ENST00000637988 RCL1Q9Y2P8 373 aaKnown RBP5.41□□□□□ -1.54
SCN1A-217ENST00000637988 hCG_38984A0A1B0GV85 526 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 TCRBV3S1A0A5B6 114 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 HSBP1O75506 76 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 PPP1R17O96001 155 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 ALPLP05186 524 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 PRSS1P07477 247 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 DRD3P35462 400 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 WNT5AP41221 380 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 SLC25A1P53007 311 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 LSM6P62312 80 aaKnown RBP5.4□□□□□ -1.54
SCN1A-217ENST00000637988 CLEC12BQ2HXU8 276 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 HIKESHIQ53FT3 197 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 C1QL3Q5VWW1 255 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 OR2G2Q8NGZ5 317 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 OR4Q3Q8NH05 313 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 CRYGNQ8WXF5 182 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 MARC2Q969Z3 335 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 RAB33BQ9H082 229 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 BCL2L10Q9HD36 194 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 PHLDA3Q9Y5J5 127 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 OR2A25A4D2G3 310 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 DHRS7CA6NNS2 312 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 P01737 135 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 HCCSP53701 268 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 SLC38A11Q08AI6 406 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 FAM214BQ7L5A3 538 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 OR13F1Q8NGS4 319 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 FAM222BQ8WU58 562 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 ORAI1Q96D31 301 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 C2orf50Q96LR7 162 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 FIZ1Q96SL8 496 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 MGAMO43451 1857 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 CACNA1BQ00975 2339 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 PARP14Q460N5 1801 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 PLPP3O14495 311 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 NPFFO15130 113 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 IGHV3-13P01766 116 aa5.4□□□□□ -1.54
SCN1A-217ENST00000637988 IGHV3-7P01780 117 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms