RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 RDH12Q96NR8 316 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 CHST6Q9GZX3 395 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 COMMD4Q9H0A8 199 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 ISG20L2Q9H9L3 353 aaKnown RBP12.92□□□□□ -0.34
CLN3-264ENST00000637985 AMBNQ9NP70 447 aa12.92□□□□□ -0.34
CLN3-264ENST00000637985 EXOSC4Q9NPD3 245 aaKnown RBP12.92□□□□□ -0.34
CLN3-264ENST00000637985 PLECQ15149 4684 aaKnown RBP12.92□□□□□ -0.34
CLN3-264ENST00000637985 IGKV1-12A0A0C4DH73 117 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 FUOMA2VDF0 154 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 IGKV1D-12P01611 117 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 DUSP1P28562 367 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 GBX2P52951 348 aaPredicted RBP12.91□□□□□ -0.34
CLN3-264ENST00000637985 SLC34A1Q06495 639 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 ABCA11PQ4W5N1 156 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 PARP16Q8N5Y8 322 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 ZNF555Q8NEP9 628 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 OR52I1Q8NGK6 324 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 OR5AK2Q8NH90 309 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 RFT1Q96AA3 541 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 AKR1E2Q96JD6 320 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 LIN7BQ9HAP6 207 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 GSTK1Q9Y2Q3 226 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 UBE2J1Q9Y385 318 aaPredicted RBP12.91□□□□□ -0.34
CLN3-264ENST00000637985 HILPDAQ9Y5L2 63 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 SMAD5-AS1Q9Y6J3 95 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 SESN1Q9Y6P5 492 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 FRAS1Q86XX4 4008 aa12.91□□□□□ -0.34
CLN3-264ENST00000637985 RYR1P21817 5038 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 MEX3AA1L020 520 aaKnown RBP12.9□□□□□ -0.34
CLN3-264ENST00000637985 SULT1B1O43704 296 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 BAG2O95816 211 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 OR2H2O95918 312 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 AMY1AP04745 511 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 AMY2AP04746 511 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 CALCBP10092 127 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 OR3A1P47881 315 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 P2RX3P56373 397 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 DYNC1I2Q13409 638 aaKnown RBP12.9□□□□□ -0.34
CLN3-264ENST00000637985 MINOS1Q5TGZ0 78 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 TPRX1Q8N7U7 411 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 CHST4Q8NCG5 386 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 APH1BQ8WW43 257 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 SPACA5Q96QH8 159 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 JAM3Q9BX67 310 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 FGF20Q9NP95 211 aaPredicted RBP12.9□□□□□ -0.34
CLN3-264ENST00000637985 SMPD3Q9NY59 655 aaPredicted RBP12.9□□□□□ -0.34
CLN3-264ENST00000637985 DHDHQ9UQ10 334 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 MINOS1-NBL1R4GNA1 71 aa12.9□□□□□ -0.34
CLN3-264ENST00000637985 IGHV2-26A0A0B4J1V2 119 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 PSMB11A5LHX3 300 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 E9PI62 339 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 SIRPB1O00241 398 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 HCKP08631 526 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 SNU13P55769 128 aaKnown RBP12.89□□□□□ -0.35
CLN3-264ENST00000637985 KISS1Q15726 138 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 ZSCAN26Q16670 478 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 TRAPPC6BQ86SZ2 158 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 OR5D18Q8NGL1 313 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 CORO2AQ92828 525 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 CPNE2Q96FN4 548 aaPredicted RBP12.89□□□□□ -0.35
CLN3-264ENST00000637985 PDCD1LG2Q9BQ51 273 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 CLEC7AQ9BXN2 247 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 TMEM133Q9H2Q1 129 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 GAL3ST2Q9H3Q3 398 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 ZFP57Q9NU63 452 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 SCOCQ9UIL1 159 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 KIAA2026Q5HYC2 2103 aa12.89□□□□□ -0.35
CLN3-264ENST00000637985 SORL1Q92673 2214 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 TRGV10A0A0A0MS01 117 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 WBP4O75554 376 aaKnown RBP12.88□□□□□ -0.35
CLN3-264ENST00000637985 CSN2P05814 226 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 LIMS3P0CW19 117 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 LIMS4P0CW20 117 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 TMEM225BP0DP42 221 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 DCKP27707 260 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 ZP1P60852 638 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 CCDC58Q4VC31 144 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 C9orf66Q5T8R8 295 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 OR52W1Q6IF63 320 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 ZNF329Q86UD4 541 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 TSEN15Q8WW01 171 aaKnown RBP12.88□□□□□ -0.35
CLN3-264ENST00000637985 STMN2Q93045 179 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 TAS2R3Q9NYW6 316 aa12.88□□□□□ -0.35
CLN3-264ENST00000637985 ZNF256Q9Y2P7 627 aaPredicted RBP12.88□□□□□ -0.35
CLN3-264ENST00000637985 IRGMA1A4Y4 181 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 SH2D7A6NKC9 451 aaPredicted RBP12.87□□□□□ -0.35
CLN3-264ENST00000637985 NUDT19A8MXV4 375 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 MAGEB3O15480 346 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 SNRNP70P08621 437 aaKnown RBP12.87□□□□□ -0.35
CLN3-264ENST00000637985 ZNF44P15621 663 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 MTNR1BP49286 362 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 ZNF691Q5VV52 312 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 ELP2Q6IA86 826 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 ZNF529Q6P280 563 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 Q6P435 159 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 RPL22L1Q6P5R6 122 aaKnown RBP12.87□□□□□ -0.35
CLN3-264ENST00000637985 HEPN1Q6WQI6 88 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 RTN4RL2Q86UN3 420 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 KLHL30-AS1Q8NEE0 82 aa12.87□□□□□ -0.35
CLN3-264ENST00000637985 PXT1Q8NFP0 134 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 56.8 ms