RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 ZNF93P35789 620 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ROM1Q03395 351 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 DMWDQ09019 674 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 KCTD18Q6PI47 426 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 LHFPL2Q6ZUX7 228 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 C5orf30Q96GV9 206 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 FER1L6-AS2Q96M78 137 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 LRRC61Q9BV99 259 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 MMP25Q9NPA2 562 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 KLK13Q9UKR3 277 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 TTC3P53804 2025 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ALS2Q96Q42 1657 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 RGPD2P0DJD1 1756 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 H3BUT2 72 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 RAD51DO75771 328 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 MPIG6BO95866 241 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 MT-ATP6P00846 226 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 THY1P04216 161 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 CDKN2AP42771 156 aaKnown RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 UQCRFS1P47985 274 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 CCL20P78556 96 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 PMP22Q01453 160 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ZXDCQ2QGD7 858 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 HOGA1Q86XE5 327 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 GVQW1Q8N7I0 195 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 RPS4Y2Q8TD47 263 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 RAB1CQ92928 201 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 MRPL18Q9H0U6 180 aaKnown RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 CXCL16Q9H2A7 254 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 UBE2ZQ9H832 354 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF160Q9HCG1 818 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 CLEC1BQ9P126 229 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ENTPD2Q9Y5L3 495 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 MRPS18BQ9Y676 258 aaKnown RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 KIAA0100Q14667 2235 aaKnown RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 STRCQ7RTU9 1775 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 LY75O60449 1722 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 HELTA6NFD8 242 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 CCL16O15467 120 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 KBTBD11O94819 623 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 NTSR1P30989 418 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 APOBEC1P41238 236 aaKnown RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 GPR12P47775 334 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 SEC11AP67812 179 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 EWSR1Q01844 656 aaKnown RBP eCLIP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 MEP1BQ16820 701 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 HLA-DQA1Q5Y7H0 255 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF695Q8IW36 515 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 OR4N5Q8IXE1 308 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 OR2L13Q8N349 312 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 OR2AJ1Q8NGZ0 328 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 SGMS2Q8NHU3 365 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 EAF1Q96JC9 268 aaPredicted RBP5.04□□□□□ -1.6
SCN1A-216ENST00000637968 FAM110AQ9BQ89 295 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ULBP3Q9BZM4 244 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF286AQ9HBT8 521 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 SPANXA1Q9NS26 97 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 KIAA1217Q5T5P2 1943 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 CCDC88CQ9P219 2028 aa5.04□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF816-ZNF321PA0A0X1KG74 233 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 GRXCR1A8MXD5 290 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 J3QR06 171 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 TIAF1O95411 115 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 TIMP1P01033 207 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 PFN1P07737 140 aaKnown RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 HLA-DOBP13765 273 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 ACRV1P26436 265 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF83P51522 516 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 TCF24Q7RTU0 167 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 OR5C1Q8NGR4 320 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 OR10G6Q8NH81 332 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 ZNF519Q8TB69 540 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 FGF13Q92913 245 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 GMPPAQ96IJ6 420 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 Q96M85 177 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 SRA1Q9HD15 236 aaKnown RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 BCL2L10Q9HD36 194 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 HHLA2Q9UM44 414 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 DOT1LQ8TEK3 1739 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 SIPA1L3O60292 1781 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 FAM24AA6NFZ4 105 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 SNURFLB1AK76 121 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 B5MCH6 92 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 H0Y980 276 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 H7C1C5 153 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 CYBAP13498 195 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 HIST1H1DP16402 221 aaKnown RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 TCL1AP56279 114 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 FMODQ06828 376 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 PLCXD2Q0VAA5 305 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 METRNLQ641Q3 311 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 VN1R1Q9GZP7 353 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 MAGEH1Q9H213 219 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 KCNK15Q9H427 330 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 TMEM30AQ9NV96 361 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 OR1A1Q9P1Q5 309 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 GPR132Q9UNW8 380 aa5.03□□□□□ -1.6
SCN1A-216ENST00000637968 TIMM8BQ9Y5J9 83 aaPredicted RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 RBBP6Q7Z6E9 1792 aaKnown RBP5.03□□□□□ -1.6
SCN1A-216ENST00000637968 SLX4Q8IY92 1834 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms