RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 BLACEA4D250 179 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 PRR19A6NJB7 356 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 CEACAM18A8MTB9 384 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF878C9JN71 531 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 NPIPB7O75200 414 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 ABHD16AO95870 558 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 DBHP09172 617 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 PTGER4P35408 488 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 RPS27P42677 84 aaKnown RBP5.96□□□□□ -1.46
SCN1A-213ENST00000636759 METAP1P53582 386 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 ZFP36L1Q07352 338 aaKnown RBP5.96□□□□□ -1.46
SCN1A-213ENST00000636759 ABCA11PQ4W5N1 156 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 RAET1LQ5VY80 246 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 FAM71F2Q6NXP2 309 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 Q6ZVL8 140 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 TMEM144Q7Z5S9 345 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 FBXL14Q8N1E6 418 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 SLC16A11Q8NCK7 471 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 C11orf40Q8WZ69 217 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 SLC35A4Q96G79 324 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 CALHM2Q9HA72 323 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF160Q9HCG1 818 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF581Q9P0T4 197 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 RFNGQ9Y644 331 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 WNT6Q9Y6F9 365 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 DOCK8Q8NF50 2099 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 FAM24AA6NFZ4 105 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 K7ESM1 405 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 CDIPTO14735 213 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 IFNA5P01569 189 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 OR10J4P0C629 311 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 LGALS7P47929 136 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 MLF1P58340 268 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 TRA2BP62995 288 aaKnown RBP5.96□□□□□ -1.46
SCN1A-213ENST00000636759 DUSP2Q05923 314 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 SMAGPQ0VAQ4 97 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 RTP5Q14D33 572 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 TRMT12Q53H54 448 aaKnown RBP5.96□□□□□ -1.46
SCN1A-213ENST00000636759 FFAR4Q5NUL3 377 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 GTF2H5Q6ZYL4 71 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 CALHM1Q8IU99 346 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 ZPLD1Q8TCW7 415 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 WDYHV1Q96HA8 205 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 HDAC8Q9BY41 377 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 ELOVL5Q9NYP7 299 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 HHLA2Q9UM44 414 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 SPEGQ15772 3267 aa5.96□□□□□ -1.46
SCN1A-213ENST00000636759 TRAV26-1A0A087WT03 109 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 IGKV1-8A0A0C4DH67 115 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 A0A1B0GWA3 101 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 TRAPPC2LH3BP13 241 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 M0R1X1 148 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 ARPC3O15145 178 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 SERF1AO75920 110 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 TTRP02766 147 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 IL3RAP26951 378 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 SLC6A8P48029 635 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 AMTP48728 403 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 RAB9AP51151 201 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 CRYBA4P53673 196 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 TAS2R30P59541 319 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 SRPXP78539 464 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 BAXQ07812 192 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 TMEM267Q0VDI3 215 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-213ENST00000636759 PCK2Q16822 640 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 LINC01590Q5TEZ4 76 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 C1QL3Q5VWW1 255 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 WBP2NLQ6ICG8 309 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 FIGLAQ6QHK4 219 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 FAM58AQ8N1B3 248 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 FER1L6-AS1Q8NA97 138 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 OR13G1Q8NGZ3 307 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF519Q8TB69 540 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 CYB5D2Q8WUJ1 264 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 MRPL27Q9P0M9 148 aaKnown RBP5.95□□□□□ -1.46
SCN1A-213ENST00000636759 COLQQ9Y215 455 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-213ENST00000636759 ENTPD2Q9Y5L3 495 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 OR6C6A6NF89 314 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 GAGE10A6NGK3 116 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 LRRC3CA6NJW4 275 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 ZNF253O75346 499 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 PITX3O75364 302 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 LYPD3O95274 346 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 MPIG6BO95866 241 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 HAND1O96004 215 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 ESDP10768 282 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 ECI1P42126 302 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 RUNX1Q01196 453 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 ELAVL3Q14576 367 aaKnown RBP5.95□□□□□ -1.46
SCN1A-213ENST00000636759 MEP1BQ16820 701 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 PLPPR5Q32ZL2 321 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 ITPRIPL2Q3MIP1 535 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 KIAA0895LQ68EN5 471 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 TMEM217Q8N7C4 229 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 OR5C1Q8NGR4 320 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 ASB10Q8WXI3 467 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 RNF166Q96A37 237 aaPredicted RBP5.95□□□□□ -1.46
SCN1A-213ENST00000636759 RAB11FIP5Q9BXF6 653 aa5.95□□□□□ -1.46
SCN1A-213ENST00000636759 MRPL13Q9BYD1 178 aaKnown RBP5.95□□□□□ -1.46
SCN1A-213ENST00000636759 SMPXQ9UHP9 88 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms