RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 THOC3Q96J01 351 aaKnown RBP10.94□□□□□ -0.66
LINC00540-203ENST00000631321 TAAR9Q96RI9 348 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 CLCC1Q96S66 551 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 CDX2Q99626 313 aaPredicted RBP10.94□□□□□ -0.66
LINC00540-203ENST00000631321 PRRG4Q9BZD6 226 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 OPA3Q9H6K4 179 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 PLEKHF2Q9H8W4 249 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 TRBV6-6A0A0A6YYG2 114 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 C5orf49A4QMS7 147 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 FAM24AA6NFZ4 105 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF724A8MTY0 619 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 C1QL1O75973 258 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 F10P00742 488 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 HLA-HP01893 362 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 IFNA4P05014 189 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 MMP9P14780 707 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 HABP2Q14520 560 aaPredicted RBP10.94□□□□□ -0.66
LINC00540-203ENST00000631321 RNF212Q495C1 297 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 ETV3LQ6ZN32 361 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 DBX2Q6ZNG2 339 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 LINC00596Q86U02 117 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 TUSC5Q8IXB3 177 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 GAPTQ8N292 157 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF565Q8N9K5 539 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 OR5A2Q8NGI9 324 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 SNIP1Q8TAD8 396 aaKnown RBP10.94□□□□□ -0.66
LINC00540-203ENST00000631321 IL22RA2Q969J5 263 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 HIST1H2BAQ96A08 127 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 PBDC1Q9BVG4 233 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 DDA1Q9BW61 102 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 RIMS4Q9H426 269 aaPredicted RBP10.94□□□□□ -0.66
LINC00540-203ENST00000631321 SMDT1Q9H4I9 107 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 LYRM2Q9NU23 88 aaPredicted RBP10.94□□□□□ -0.66
LINC00540-203ENST00000631321 B4GALT7Q9UBV7 327 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 ATP23Q9Y6H3 246 aa10.94□□□□□ -0.66
LINC00540-203ENST00000631321 TRIOBPQ9H2D6 2365 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 A0A096LPE4 126 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 IGKV1D-13A0A0B4J2D9 117 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 IGKV1-6A0A0C4DH72 117 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 A0A1W2PPZ6 126 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF503-AS2A6NEH8 195 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF732B4DXR9 585 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 PRH1P02810 166 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 IGKV1-13P0DP09 117 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 POLR2GP62487 172 aaKnown RBP eCLIP10.93□□□□□ -0.66
LINC00540-203ENST00000631321 ID3Q02535 119 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 AWAT1Q58HT5 328 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 OR8G5Q8NG78 346 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 C14orf79Q96F83 325 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 POM121L2Q96KW2 1035 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 SIGLEC12Q96PQ1 595 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 SLC25A31Q9H0C2 315 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 SLC35B3Q9H1N7 401 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 PLK3Q9H4B4 646 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 C7orf77A4D0Y5 90 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 UMAD1C9J7I0 102 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 TRAPPC2LH3BP13 241 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 SYNGR4O95473 234 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 CELA3AP09093 270 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 ARR3P36575 388 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 RPL35P42766 123 aaKnown RBP10.93□□□□□ -0.66
LINC00540-203ENST00000631321 FOXG1P55316 489 aaPredicted RBP10.93□□□□□ -0.66
LINC00540-203ENST00000631321 TMEM252Q8N6L7 170 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 PLPPR1Q8TBJ4 325 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 EIF5A2Q9GZV4 153 aaKnown RBP10.93□□□□□ -0.66
LINC00540-203ENST00000631321 SPACA1Q9HBV2 294 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 RPS10P5Q9NQ39 176 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 IL36RNQ9UBH0 155 aa10.93□□□□□ -0.66
LINC00540-203ENST00000631321 PROB1E7EW31 1015 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 ADAM20O43506 726 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 MT-ND4LP03901 98 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 VDAC1P21796 283 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 CCNOP22674 350 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 PTAFRP25105 342 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 AKR1D1P51857 326 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 RAB5BP61020 215 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 SRYQ05066 204 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 SPIN3Q5JUX0 258 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 C9orf135Q5VTT2 229 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 TMEM182Q6ZP80 229 aaPredicted RBP10.92□□□□□ -0.66
LINC00540-203ENST00000631321 C5orf24Q7Z6I8 188 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 OR5D13Q8NGL4 314 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 STRADBQ9C0K7 418 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 CALHM2Q9HA72 323 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 TNRC6AQ8NDV7 1962 aaKnown RBP10.92□□□□□ -0.66
LINC00540-203ENST00000631321 H0Y980 276 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF883P0CG24 379 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 CCL2P13500 99 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 ATP6V0CP27449 155 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 BAXQ07812 192 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 RHEBQ15382 184 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 TSC22D1Q15714 1073 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 CXorf66Q5JRM2 361 aaPredicted RBP10.92□□□□□ -0.66
LINC00540-203ENST00000631321 SP5Q6BEB4 398 aaPredicted RBP10.92□□□□□ -0.66
LINC00540-203ENST00000631321 ZNF880Q6PDB4 577 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 PCSK4Q6UW60 755 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 C1orf210Q8IVY1 113 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 ODF3L1Q8IXM7 274 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 FAM213BQ8TBF2 198 aa10.92□□□□□ -0.66
LINC00540-203ENST00000631321 MRPL30Q8TCC3 161 aaKnown RBP10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms