RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 RNF223E7ERA6 249 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 NDUFB7P17568 137 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 TAS2R20P59543 309 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 SEC61A1P61619 476 aaKnown RBP11.9□□□□□ -0.5
UPF1-211ENST00000600868 GNB2P62879 340 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 ATXN7L3Q14CW9 347 aaPredicted RBP11.9□□□□□ -0.5
UPF1-211ENST00000600868 PNLIPRP3Q17RR3 467 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 ESCO2Q56NI9 601 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 SLC35E4Q6ICL7 350 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 GDPD3Q7L5L3 318 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 CCDC190Q86UF4 302 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 IZUMO1Q8IYV9 350 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 GAPTQ8N292 157 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 FGFRL1Q8N441 504 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 DTX3Q8N9I9 347 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 PLPPR1Q8TBJ4 325 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 C15orf40Q8WUR7 153 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 COQ2Q96H96 371 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 SOSTQ9BQB4 213 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 SSBP3Q9BWW4 388 aaPredicted RBP11.9□□□□□ -0.5
UPF1-211ENST00000600868 RIMS4Q9H426 269 aaPredicted RBP11.9□□□□□ -0.5
UPF1-211ENST00000600868 AUNIPQ9H7T9 357 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 ZMAT3Q9HA38 289 aaKnown RBP11.9□□□□□ -0.5
UPF1-211ENST00000600868 ETAA1Q9NY74 926 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 AK3Q9UIJ7 227 aa11.9□□□□□ -0.5
UPF1-211ENST00000600868 NOTCH2Q04721 2471 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 CCDC168Q8NDH2 2452 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 MAP1AP78559 2803 aaPredicted RBP11.89□□□□□ -0.51
UPF1-211ENST00000600868 TMEM235A6NFC5 223 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 POM121CA8CG34 1229 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 H7C1Q1 480 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 ECDO95905 644 aaPredicted RBP11.89□□□□□ -0.51
UPF1-211ENST00000600868 HLA-DQB1P01920 261 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 IL2RGP31785 369 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 ETV6P41212 452 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 P2RX3P56373 397 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 AESQ08117 197 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 KRBOX4Q5JUW0 171 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 HACD4Q5VWC8 232 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 RSBN1Q5VWQ0 802 aaPredicted RBP11.89□□□□□ -0.51
UPF1-211ENST00000600868 OLFML2AQ68BL7 652 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 ZNF497Q6ZNH5 498 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 C1orf159Q96HA4 380 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 CYYR1Q96J86 154 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 ITGB1BP2Q9UKP3 347 aa11.89□□□□□ -0.51
UPF1-211ENST00000600868 TRBV23-1A0A0A0MS06 115 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 TMEM30CPA0ZSE6 113 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 FABP12A6NFH5 140 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 KIAA1324LA8MWY0 1029 aaPredicted RBP11.88□□□□□ -0.51
UPF1-211ENST00000600868 FOXH1O75593 365 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 NAPSAO96009 420 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 MT-ND4P03905 459 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 CD3GP09693 182 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 PTBP1P26599 531 aaKnown RBP eCLIP11.88□□□□□ -0.51
UPF1-211ENST00000600868 GLIPR1P48060 266 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 PITPNAQ00169 270 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 ARFRP1Q13795 201 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 EDDM3AQ14507 147 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 SPANXN2Q5MJ10 180 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 CD276Q5ZPR3 534 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 DYRK2Q92630 601 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 CMSS1Q9BQ75 279 aaKnown RBP11.88□□□□□ -0.51
UPF1-211ENST00000600868 DCTN5Q9BTE1 182 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 LPAR3Q9UBY5 353 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 MRPS7Q9Y2R9 242 aaKnown RBP11.88□□□□□ -0.51
UPF1-211ENST00000600868 POLR3KQ9Y2Y1 108 aaPredicted RBP11.88□□□□□ -0.51
UPF1-211ENST00000600868 MALRD1Q5VYJ5 2156 aa11.88□□□□□ -0.51
UPF1-211ENST00000600868 CSMD1Q96PZ7 3565 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 DOCK11Q5JSL3 2073 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 LOC105371242A0A075B767 164 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 TRBV6-6A0A0A6YYG2 114 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 A0A0G2JMP0 313 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 A0A0X1KG70 313 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 ODAMA1E959 279 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 FAM157AC9JC47 383 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 PHF1O43189 567 aaPredicted RBP11.87□□□□□ -0.51
UPF1-211ENST00000600868 ZFP36P26651 326 aaKnown RBP11.87□□□□□ -0.51
UPF1-211ENST00000600868 PRSS3P35030 304 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 EDDM3BP56851 147 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 GNG2P59768 71 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 RPL31P62899 125 aaKnown RBP11.87□□□□□ -0.51
UPF1-211ENST00000600868 MRPS15P82914 257 aaKnown RBP11.87□□□□□ -0.51
UPF1-211ENST00000600868 MEF2CQ06413 473 aaPredicted RBP11.87□□□□□ -0.51
UPF1-211ENST00000600868 IL18Q14116 193 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 PYHIN1Q6K0P9 492 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 BTN2A1Q7KYR7 527 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 LY6G5BQ8NDX9 201 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 OR4M2Q8NGB6 313 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 C8orf46Q8TAG6 207 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 MRPL30Q8TCC3 161 aaKnown RBP11.87□□□□□ -0.51
UPF1-211ENST00000600868 H1FXQ92522 213 aaKnown RBP11.87□□□□□ -0.51
UPF1-211ENST00000600868 DMRTB1Q96MA1 342 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 ABHD1Q96SE0 405 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 SCPEP1Q9HB40 452 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 C12orf4Q9NQ89 552 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 KIF25Q9UIL4 384 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 RPUSD1Q9UJJ7 312 aaKnown RBP11.87□□□□□ -0.51
UPF1-211ENST00000600868 ELF5Q9UKW6 265 aaPredicted RBP11.87□□□□□ -0.51
UPF1-211ENST00000600868 V9GYH0 126 aa11.87□□□□□ -0.51
UPF1-211ENST00000600868 MEIKINA0A087WXM9 373 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms