RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, human

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-223	ENST00000600552	SLC35A2	P78381	396 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CDK5R1	Q15078	307 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CCDC144NL	Q6NUI1	221 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	ZNF329	Q86UD4	541 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	SERPINA12	Q8IW75	414 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	SAXO1	Q8IYX7	474 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CBR4	Q8N4T8	237 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CHST4	Q8NCG5	386 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	WFDC9	Q8NEX5	89 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	OR13A1	Q8NGR1	328 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	OR5AK2	Q8NH90	309 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	TNFAIP8L1	Q8WVP5	186 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	PDCD1LG2	Q9BQ51	273 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	OR6C3	Q9NZP0	311 aa		14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	EXOG	Q9Y2C4	368 aa	Known RBP	14	□□□□□ -0.17
SHKBP1-223	ENST00000600552	KBTBD11-OT1	A0A1B0GTJ5	212 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552		A0A1W2PPE3	182 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	SULT1B1	O43704	296 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CLIC3	O95833	236 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	AMY1A	P04745	511 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	AMY2A	P04746	511 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	SNRNP70	P08621	437 aa	Known RBP	13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CD34	P28906	385 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	ZP1	P60852	638 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	GALE	Q14376	348 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	RSU1	Q15404	277 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	DRAM1	Q8N682	238 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	OR56B4	Q8NH76	319 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	OR9G1	Q8NH87	305 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	MRGPRD	Q8TDS7	321 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	KIRREL1	Q96J84	757 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	FAM53C	Q9NYF3	392 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CALY	Q9NYX4	217 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	LINC00527	Q9UJ94	153 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	DNAH3	Q8TD57	4116 aa		13.99	□□□□□ -0.17
SHKBP1-223	ENST00000600552	PSMB11	A5LHX3	300 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	LY6L	H3BQJ8	138 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	MAGEB3	O15480	346 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	ZFPL1	O95159	310 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	HTR3B	O95264	441 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CSN2	P05814	226 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	DBT	P11182	482 aa	Known RBP	13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	C21orf33	P30042	268 aa	Predicted RBP	13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	HOXD3	P31249	432 aa	Predicted RBP	13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	MTNR1B	P49286	362 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	ALDH3A2	P51648	485 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	GBX2	P52951	348 aa	Predicted RBP	13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	SLC25A30	Q5SVS4	291 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	ZNF565	Q8N9K5	539 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CNIH3	Q8TBE1	160 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	NOL4L	Q96MY1	436 aa	Predicted RBP	13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	BARHL1	Q9BZE3	327 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	RHOF	Q9HBH0	211 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	INPP5E	Q9NRR6	644 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	IDI2-AS1	Q9NZ38	188 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	ING4	Q9UNL4	249 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	MOB4	Q9Y3A3	225 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	AMMECR1	Q9Y4X0	333 aa	Predicted RBP	13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	HSPE1-MOB4	S4R3N1	261 aa		13.98	□□□□□ -0.17
SHKBP1-223	ENST00000600552	TRAV24	A0A0B4J272	114 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	NUDT19	A8MXV4	375 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552		J3QR06	171 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552		K7EIL1	84 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	FADS2	O95864	444 aa	Known RBP	13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	RPSA	P08865	295 aa	Known RBP	13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	TMEM11	P17152	192 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	RAB3A	P20336	220 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	KRTAP10-11	P60412	298 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	DIAPH2-AS1	Q14236	149 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	PIGY	Q3MUY2	71 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	OR51A2	Q8NGJ7	313 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	PLPPR1	Q8TBJ4	325 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	MYCBP	Q99417	103 aa	Predicted RBP	13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	ERVK13-1	Q9NX77	482 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	TAS2R4	Q9NYW5	299 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	PSG11	Q9UQ72	335 aa		13.97	□□□□□ -0.17
SHKBP1-223	ENST00000600552	WI2-2373I1.2	A0A1W2PRP0	233 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	TMEM212	A6NML5	194 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	OOSP1	A8MZH6	123 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552		M0QZK8	103 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	GABRP	O00591	440 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CDRT1	O95170	752 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	CCDC159	P0C7I6	412 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	GTF2A1	P52655	376 aa	Predicted RBP	13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	OSR2	Q8N2R0	312 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	PARP16	Q8N5Y8	322 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	OR51T1	Q8NGJ9	327 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	OR10X1	Q8NGY0	326 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	UBALD1	Q8TB05	177 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552	RCC1L	Q96I51	464 aa	Known RBP	13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552		Q96MT0	163 aa		13.96	□□□□□ -0.17
SHKBP1-223	ENST00000600552		A0A087X0M5	115 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552		A0A1B0GX30	115 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552	SERPINE3	A8MV23	424 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552		H3BNX3	289 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552	SSTR5	P35346	364 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552	REG1B	P48304	166 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552	MADCAM1	Q13477	382 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552	C18orf65	Q6ZTR6	163 aa		13.95	□□□□□ -0.18
SHKBP1-223	ENST00000600552	MOB3B	Q86TA1	216 aa		13.95	□□□□□ -0.18

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