RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 C12orf54Q6X4T0 127 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 LRRTM1Q86UE6 522 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 OR13D1Q8NGV5 346 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 MUL1Q969V5 352 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 MRPS24Q96EL2 167 aaKnown RBP13.1□□□□□ -0.31
TRIM28-213ENST00000598355 TMED9Q9BVK6 235 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 PPIL3Q9H2H8 161 aaKnown RBP13.1□□□□□ -0.31
TRIM28-213ENST00000598355 DPAGT1Q9H3H5 408 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 LINC00574Q9H8X3 128 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 RCC2Q9P258 522 aaKnown RBP13.1□□□□□ -0.31
TRIM28-213ENST00000598355 VPREB3Q9UKI3 123 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 MRPS28Q9Y2Q9 187 aaKnown RBP13.1□□□□□ -0.31
TRIM28-213ENST00000598355 RRP15Q9Y3B9 282 aaKnown RBP13.1□□□□□ -0.31
TRIM28-213ENST00000598355 TBL2Q9Y4P3 447 aaKnown RBP13.1□□□□□ -0.31
TRIM28-213ENST00000598355 MMP24Q9Y5R2 645 aa13.1□□□□□ -0.31
TRIM28-213ENST00000598355 IGHV2-26A0A0B4J1V2 119 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 MEGF11A6BM72 1044 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 VGLL3A8MV65 326 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 GPR137BO60478 399 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 MMP23AO75900 390 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 NDUFA7O95182 113 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 PAHP00439 452 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 CSTBP04080 98 aaKnown RBP13.09□□□□□ -0.31
TRIM28-213ENST00000598355 GTF2F2P13984 249 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 COX7A1P24310 79 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 PSMA1P25786 263 aaKnown RBP13.09□□□□□ -0.31
TRIM28-213ENST00000598355 CD34P28906 385 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 RELBQ01201 579 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 SCN1BQ07699 218 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 TRAM1Q15629 374 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 SLC22A6Q4U2R8 563 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 KRBOX4Q5JUW0 171 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 TMEM91Q6ZNR0 172 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 JAGN1Q8N5M9 183 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 OR5R1Q8NH85 324 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 PLPPR1Q8TBJ4 325 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 NR1H4Q96RI1 486 aaPredicted RBP13.09□□□□□ -0.31
TRIM28-213ENST00000598355 MGLLQ99685 303 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 GAL3ST2Q9H3Q3 398 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 PCDHB16Q9NRJ7 776 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 OR6C3Q9NZP0 311 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 C1RLQ9NZP8 487 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 ING4Q9UNL4 249 aa13.09□□□□□ -0.31
TRIM28-213ENST00000598355 A0A087X0M5 115 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 A0A1B0GX30 115 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 ZNF729A6NN14 1252 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-213ENST00000598355 GEMIN2O14893 280 aaKnown RBP13.08□□□□□ -0.32
TRIM28-213ENST00000598355 CFPP27918 469 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 MAP2K4P45985 399 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 RPS25P62851 125 aaKnown RBP13.08□□□□□ -0.32
TRIM28-213ENST00000598355 C17orf58Q2M2W7 97 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 C1orf100Q5SVJ3 147 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 AWAT2Q6E213 333 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 GLIPR1L1Q6UWM5 242 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 ZNF367Q7RTV3 350 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 LHFPL4Q7Z7J7 247 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 SUMF2Q8NBJ7 301 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 FOXRED1Q96CU9 486 aaPredicted RBP13.08□□□□□ -0.32
TRIM28-213ENST00000598355 S100A13Q99584 98 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 CCDC90BQ9GZT6 254 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 TMEM133Q9H2Q1 129 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 Q9H521 79 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 ACOT13Q9NPJ3 140 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 GHRLQ9UBU3 117 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 KIF25Q9UIL4 384 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 FBN3Q75N90 2809 aa13.08□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A10PA6NDY2 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A18PA6NE21 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A16PA6NEW6 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A20PA6NIJ5 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A7PA6NKC0 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A22PA8MWA6 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A12PA8MX19 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A5PA8MXJ8 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A23PA8MXZ1 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 HSPB6O14558 160 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 OR7C1O76099 320 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A15PP0C7V4 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A13PP0C7W8 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A14PP0C7W9 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 FAM90A24PP0C7X0 464 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 SRMP19623 302 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 GABRA5P31644 462 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 GDNFP39905 211 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 SSX1Q16384 188 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 LRRC75BQ2VPJ9 315 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 HSD17B12Q53GQ0 312 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 MINOS1Q5TGZ0 78 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 TRAPPC6BQ86SZ2 158 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 DYNAPQ8N1N2 210 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 TMEM104Q8NE00 496 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 Q96M66 194 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 DPCDQ9BVM2 203 aaPredicted RBP13.07□□□□□ -0.32
TRIM28-213ENST00000598355 TCF7L1Q9HCS4 588 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 MINOS1-NBL1R4GNA1 71 aa13.07□□□□□ -0.32
TRIM28-213ENST00000598355 NPIPB11E5RHQ5 1161 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 IGLV1-47P01700 117 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 ARG1P05089 322 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 HSMCR30P0CW71 290 aa13.06□□□□□ -0.32
TRIM28-213ENST00000598355 CDK2P24941 298 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms