RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 NSUN5P2Q63ZY6 315 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 LIAT1Q6ZQX7 453 aa13.23□□□□□ -0.29
UPF1-204ENST00000596842 NBEAQ8NFP9 2946 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 GPR137BO60478 399 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 NKX2-1P43699 371 aaPredicted RBP13.22□□□□□ -0.29
UPF1-204ENST00000596842 CNN3Q15417 329 aaKnown RBP13.22□□□□□ -0.29
UPF1-204ENST00000596842 CEACAM16Q2WEN9 425 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 WDR74Q6RFH5 385 aaPredicted RBP13.22□□□□□ -0.29
UPF1-204ENST00000596842 MYPOPQ86VE0 399 aaPredicted RBP13.22□□□□□ -0.29
UPF1-204ENST00000596842 SNX22Q96L94 193 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 RNF24Q9Y225 148 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 ZNF16P17020 682 aaPredicted RBP13.22□□□□□ -0.29
UPF1-204ENST00000596842 ZNF92Q03936 586 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 AAED1Q7RTV5 226 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 TMEM123Q8N131 208 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 OR5C1Q8NGR4 320 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 IL1F10Q8WWZ1 152 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 ANAPC10Q9UM13 185 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 DANCRP0C864 163 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 EWSR1Q01844 656 aaKnown RBP eCLIP13.22□□□□□ -0.29
UPF1-204ENST00000596842 OR51H1Q8NH63 302 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 FGFBP3Q8TAT2 258 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 SLC35B3Q9H1N7 401 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 TIMM10BQ9Y5J6 103 aa13.22□□□□□ -0.29
UPF1-204ENST00000596842 A0A0U1RQV5 110 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 ADAM20O43506 726 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 CCL4P13236 92 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 CHATP28329 748 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 OTX2P32243 289 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 P2RY1P47900 373 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 PKIAP61925 76 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 CALHM1Q8IU99 346 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 OR1F12Q8NHA8 337 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 NABP1Q96AH0 204 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 RBM7Q9Y580 266 aaKnown RBP13.21□□□□□ -0.29
UPF1-204ENST00000596842 ARHGAP21Q5T5U3 1957 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 H0YL77 283 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 GAPDHP04406 335 aaKnown RBP13.21□□□□□ -0.29
UPF1-204ENST00000596842 TCN2P20062 427 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 BTF3P20290 206 aaKnown RBP13.21□□□□□ -0.29
UPF1-204ENST00000596842 ATP6V0CP27449 155 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 VASH2Q86V25 355 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 CADM4Q8NFZ8 388 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 RHBDD1Q8TEB9 315 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 IL36RNQ9UBH0 155 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 V9GYS6 101 aa13.21□□□□□ -0.29
UPF1-204ENST00000596842 TRAV39A0A0B4J263 110 aa13.21□□□□□ -0.3
UPF1-204ENST00000596842 HLA-HP01893 362 aa13.21□□□□□ -0.3
UPF1-204ENST00000596842 NUBP1P53384 320 aa13.21□□□□□ -0.3
UPF1-204ENST00000596842 CARD18P57730 90 aa13.21□□□□□ -0.3
UPF1-204ENST00000596842 OR5I1Q13606 314 aa13.21□□□□□ -0.3
UPF1-204ENST00000596842 OR2C3Q8N628 320 aa13.21□□□□□ -0.3
UPF1-204ENST00000596842 ZNF611Q8N823 705 aa13.21□□□□□ -0.3
UPF1-204ENST00000596842 TM2D1Q9BX74 207 aa13.21□□□□□ -0.3
UPF1-204ENST00000596842 SLC7A10Q9NS82 523 aa13.21□□□□□ -0.3
UPF1-204ENST00000596842 METTL1Q9UBP6 276 aaKnown RBP13.21□□□□□ -0.3
UPF1-204ENST00000596842 A0A0G2JMM0 328 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 A0A1W2PPB8 328 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 A0A1W2PRS3 328 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 KIR3DP1A8MWS1 328 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 ARF1P84077 181 aaKnown RBP13.2□□□□□ -0.3
UPF1-204ENST00000596842 SLC23A3Q6PIS1 610 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 KMT5CQ86Y97 462 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 OR1J1Q8NGS3 322 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 PACRGQ96M98 296 aaPredicted RBP13.2□□□□□ -0.3
UPF1-204ENST00000596842 TUBD1Q9UJT1 453 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 ZNF724A8MTY0 619 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 NTF4P34130 210 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 SSR4P51571 173 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 WIPI1Q5MNZ9 446 aaPredicted RBP13.2□□□□□ -0.3
UPF1-204ENST00000596842 NCR3LG1Q68D85 454 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 RTL6Q6ICC9 239 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 RPS19BP1Q86WX3 136 aaKnown RBP13.2□□□□□ -0.3
UPF1-204ENST00000596842 FAM185AQ8N0U4 392 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 ZNF845Q96IR2 970 aaPredicted RBP13.2□□□□□ -0.3
UPF1-204ENST00000596842 WFIKKN1Q96NZ8 548 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 DOCK10Q96BY6 2186 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 C3orf85A0A1B0GTC6 90 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 PPYP01298 95 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 IGFBP7Q16270 282 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 ZNF610Q8N9Z0 462 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 SSC4DQ8WTU2 575 aa13.2□□□□□ -0.3
UPF1-204ENST00000596842 UBE2CO00762 179 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 HS3ST1O14792 307 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 MLF1P58340 268 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 ZNF154Q13106 437 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 HIST3H3Q16695 136 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 TBC1D26Q86UD7 250 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 NECAP1Q8NC96 275 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 ABHD3Q8WU67 409 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 NTNG2Q96CW9 530 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 STARD10Q9Y365 291 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 DOCK11Q5JSL3 2073 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 ZFP92A6NM28 416 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 SCTP09683 121 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 SEC11BP0C7V7 166 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 VHLLQ6RSH7 139 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 CCDC71LQ8N9Z2 235 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 RDH5Q92781 318 aa13.19□□□□□ -0.3
UPF1-204ENST00000596842 HSF4Q9ULV5 492 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms