RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 CLEC7AQ9BXN2 247 aa12.23□□□□□ -0.45
TRIM28-205ENST00000595028 PPIL3Q9H2H8 161 aaKnown RBP12.23□□□□□ -0.45
TRIM28-205ENST00000595028 TMEM133Q9H2Q1 129 aa12.23□□□□□ -0.45
TRIM28-205ENST00000595028 TAS2R3Q9NYW6 316 aa12.23□□□□□ -0.45
TRIM28-205ENST00000595028 MYF6P23409 242 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 RBM11P57052 281 aaKnown RBP12.22□□□□□ -0.45
TRIM28-205ENST00000595028 DYNC1I2Q13409 638 aaKnown RBP12.22□□□□□ -0.45
TRIM28-205ENST00000595028 PLA1AQ53H76 456 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 HEPN1Q6WQI6 88 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 THRSPQ92748 146 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 MYDGFQ969H8 173 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 ANKRD60Q9BZ19 345 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 METTL9Q9H1A3 318 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 VCX3BQ9H321 246 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 C16orf95Q9H693 158 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 PAK1IP1Q9NWT1 392 aaPredicted RBP12.22□□□□□ -0.45
TRIM28-205ENST00000595028 ING3Q9NXR8 418 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 SCN3BQ9NY72 215 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 FOXJ3Q9UPW0 622 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 LSM2Q9Y333 95 aaKnown RBP12.22□□□□□ -0.45
TRIM28-205ENST00000595028 RNF114Q9Y508 228 aa12.22□□□□□ -0.45
TRIM28-205ENST00000595028 RYR3Q15413 4870 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 A0A1W2PPK0 400 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 PTGES3LE9PB15 166 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 PIN1P1O15428 100 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 ZNF780AO75290 641 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-205ENST00000595028 TSPAN9O75954 239 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 SERPINA2P20848 420 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 CDK2P24941 298 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 MAPK3P27361 379 aaPredicted RBP12.21□□□□□ -0.45
TRIM28-205ENST00000595028 GDNFP39905 211 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 KCNJ3P48549 501 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 SLC35A2P78381 396 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 PAX5Q02548 391 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 MINOS1Q5TGZ0 78 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 OR52W1Q6IF63 320 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 LIAT1Q6ZQX7 453 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 OSR2Q8N2R0 312 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 JAGN1Q8N5M9 183 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 OR4P4Q8NGL7 312 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 PIFOQ8TCI5 191 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 SGCDQ92629 289 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 MALSU1Q96EH3 234 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 S100A13Q99584 98 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 IFT22Q9H7X7 185 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 RAB18Q9NP72 206 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 OR6C3Q9NZP0 311 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 KIF25Q9UIL4 384 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 ING4Q9UNL4 249 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 ST3GAL6Q9Y274 331 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 MINOS1-NBL1R4GNA1 71 aa12.21□□□□□ -0.45
TRIM28-205ENST00000595028 WNK1Q9H4A3 2382 aa12.21□□□□□ -0.46
TRIM28-205ENST00000595028 ZNF729A6NN14 1252 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-205ENST00000595028 H0YHG0 523 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 CHST1O43916 411 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 OR7C1O76099 320 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-205ENST00000595028 CSTBP04080 98 aaKnown RBP12.2□□□□□ -0.46
TRIM28-205ENST00000595028 GLP1RP43220 463 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 PROK1P58294 105 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 SRSF4Q08170 494 aaKnown RBP12.2□□□□□ -0.46
TRIM28-205ENST00000595028 IRF3Q14653 427 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 FAM189A2Q15884 450 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 SSX2Q16385 188 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 C17orf58Q2M2W7 97 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 SLC22A6Q4U2R8 563 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 RSBN1Q5VWQ0 802 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-205ENST00000595028 BRICD5Q6PL45 260 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 IZUMO2Q6UXV1 221 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 BAIAP2L2Q6UXY1 529 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 LINC00596Q86U02 117 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 NKAIN3Q8N8D7 197 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 PLPPR1Q8TBJ4 325 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 MUL1Q969V5 352 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 OR5M11Q96RB7 305 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 CITED1Q99966 193 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 DPCDQ9BVM2 203 aaPredicted RBP12.2□□□□□ -0.46
TRIM28-205ENST00000595028 NCOR1P1Q9H4R4 102 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 ZNF581Q9P0T4 197 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 TCF19Q9Y242 345 aa12.2□□□□□ -0.46
TRIM28-205ENST00000595028 MEIKINA0A087WXM9 373 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 A0A1W2PP11 408 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 FAM172BPA6NC97 362 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 GEMIN2O14893 280 aaKnown RBP12.19□□□□□ -0.46
TRIM28-205ENST00000595028 MAS1P04201 325 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 CD34P28906 385 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 HSPA13P48723 471 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 DYNLT3P51808 116 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 SPHARQ15513 63 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 MPV17LQ2QL34 196 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 RTN4RL2Q86UN3 420 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 CDH26Q8IXH8 852 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 SUMF2Q8NBJ7 301 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 OR4D6Q8NGJ1 314 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 OR4C13Q8NGP0 309 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 OR13A1Q8NGR1 328 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 NDNFQ8TB73 568 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 BARHL1Q9BZE3 327 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 DUSP21Q9H596 190 aa12.19□□□□□ -0.46
TRIM28-205ENST00000595028 RANBP3Q9H6Z4 567 aaPredicted RBP12.19□□□□□ -0.46
TRIM28-205ENST00000595028 ZNF286AQ9HBT8 521 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms