RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 GCDHQ92947 438 aaPredicted RBP12.76□□□□□ -0.37
SS18-215ENST00000580642 SHARPINQ9H0F6 387 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 ZNF286AQ9HBT8 521 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 MBNL3Q9NUK0 354 aaKnown RBP12.76□□□□□ -0.37
SS18-215ENST00000580642 ZNF581Q9P0T4 197 aa12.76□□□□□ -0.37
SS18-215ENST00000580642 ELF5Q9UKW6 265 aaPredicted RBP12.76□□□□□ -0.37
SS18-215ENST00000580642 IGHV3OR15-7A0A075B7D8 119 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 NDUFS8O00217 210 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 USP9YO00507 2555 aaPredicted RBP12.75□□□□□ -0.37
SS18-215ENST00000580642 PLA2G10O15496 165 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 LYRM1O43325 122 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 CTXN2P0C2S0 81 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 AMY2BP19961 511 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 GIFP27352 417 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 CDKN1AP38936 164 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 ZMYND11Q15326 602 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 GRK1Q15835 563 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 CR1LQ2VPA4 569 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 VAX1Q5SQQ9 334 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 RSBN1Q5VWQ0 802 aaPredicted RBP12.75□□□□□ -0.37
SS18-215ENST00000580642 STEAP1BQ6NZ63 245 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 TGIF2LYQ8IUE0 185 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 BPIFB2Q8N4F0 458 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 SPICQ8N5J4 248 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 ASCC1Q8N9N2 400 aaKnown RBP12.75□□□□□ -0.37
SS18-215ENST00000580642 POC5Q8NA72 575 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 BEST4Q8NFU0 473 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 GAFA1Q96PS6 74 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 GSX2Q9BZM3 304 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 PPA2Q9H2U2 334 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 CHMP1AQ9HD42 196 aaPredicted RBP12.75□□□□□ -0.37
SS18-215ENST00000580642 Q9N2K0 584 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 RAB9BQ9NP90 201 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 DCAF16Q9NXF7 216 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 COPZ2Q9P299 210 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 LPAR3Q9UBY5 353 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 TBC1D24Q9ULP9 559 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 MAB21L2Q9Y586 359 aa12.75□□□□□ -0.37
SS18-215ENST00000580642 CACNA1DQ01668 2161 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 DYSFO75923 2080 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 TANC2Q9HCD6 1990 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 GYPAP02724 150 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 GZMHP20718 246 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 DSCR9P59020 149 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 RNASE10Q5GAN6 216 aaKnown RBP12.74□□□□□ -0.37
SS18-215ENST00000580642 FAM201AQ5SY85 155 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 C6orf183Q5T699 404 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 BRICD5Q6PL45 260 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 ARRDC1Q8N5I2 433 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 DEFB108BQ8NET1 73 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 OR4S1Q8NGB4 309 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 OR5AP2Q8NGF4 316 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 OR5T2Q8NGG2 359 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 OR4K15Q8NH41 348 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 MRPL30Q8TCC3 161 aaKnown RBP12.74□□□□□ -0.37
SS18-215ENST00000580642 MARVELD3Q96A59 401 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 TMEM246Q9BRR3 403 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 ST6GALNAC5Q9BVH7 336 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 OR6C3Q9NZP0 311 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 MIOXQ9UGB7 285 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 ANXA10Q9UJ72 324 aa12.74□□□□□ -0.37
SS18-215ENST00000580642 CHD3Q12873 2000 aaKnown RBP12.73□□□□□ -0.37
SS18-215ENST00000580642 HELZ2Q9BYK8 2649 aaKnown RBP12.73□□□□□ -0.37
SS18-215ENST00000580642 TMPRSS2O15393 492 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 NDUFB3O43676 98 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 RAB3DO95716 219 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 CEBPDP49716 269 aaPredicted RBP12.73□□□□□ -0.37
SS18-215ENST00000580642 NPY4RP50391 375 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 PDLIM4P50479 330 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 P2RX3P56373 397 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 MEF2CQ06413 473 aaPredicted RBP12.73□□□□□ -0.37
SS18-215ENST00000580642 CHRFAM7AQ494W8 412 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 LRRC10Q5BKY1 277 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 RNASE12Q5GAN4 147 aaKnown RBP12.73□□□□□ -0.37
SS18-215ENST00000580642 KRBOX4Q5JUW0 171 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 ZNF787Q6DD87 383 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 GDPD3Q7L5L3 318 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 NLRC3Q7RTR2 1065 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 RTN4RL2Q86UN3 420 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 DUSP18Q8NEJ0 188 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 CHPT1Q8WUD6 406 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 SNAPC3Q92966 411 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 LURAP1Q96LR2 239 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 CCL13Q99616 98 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 HRASLSQ9HDD0 168 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 BEX4Q9NWD9 120 aaPredicted RBP12.73□□□□□ -0.37
SS18-215ENST00000580642 SLC2A8Q9NY64 477 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 KCNIP1Q9NZI2 227 aa12.73□□□□□ -0.37
SS18-215ENST00000580642 TRDCB7Z8K6 153 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 DISC1C4P0D8 188 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 HSPB6O14558 160 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 PPIHO43447 177 aaKnown RBP12.72□□□□□ -0.37
SS18-215ENST00000580642 CD3DP04234 171 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 SLC6A1P30531 599 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 GPR6P46095 362 aaPredicted RBP12.72□□□□□ -0.37
SS18-215ENST00000580642 OR3A3P47888 321 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 OXA1LQ15070 435 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 TMEM30BQ3MIR4 351 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 TMEM17Q86X19 198 aa12.72□□□□□ -0.37
SS18-215ENST00000580642 LRRC75A-AS1Q8N1F1 130 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms