RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 NCOR1P1Q9H4R4 102 aa8.95□□□□□ -0.98
SS18-213ENST00000579640 TRBV6-6A0A0A6YYG2 114 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 TMEM30CPA0ZSE6 113 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 GPR37O15354 613 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 RBBP9O75884 186 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 TFF1P04155 84 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 PTHLHP12272 177 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 RPS2P15880 293 aaKnown RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 ERP29P30040 261 aaKnown RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 ACTBP60709 375 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 ACTG1P63261 375 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 DGCR2P98153 550 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 ATXN7L3Q14CW9 347 aaPredicted RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 GDPD3Q7L5L3 318 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 TRAPPC6BQ86SZ2 158 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 FAM216BQ8N7L0 139 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 OR8B3Q8NGG8 313 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 OR52I2Q8NH67 350 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 C10orf105Q8TEF2 133 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 NUDCD2Q8WVJ2 157 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 BORCS5Q969J3 196 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 NEIL1Q96FI4 390 aaPredicted RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 OR8B2Q96RD0 313 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 SDHCQ99643 169 aaPredicted RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 OCSTAMPQ9BR26 566 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 THAP7Q9BT49 309 aaPredicted RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 CHMP1AQ9HD42 196 aaPredicted RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 SLC25A10Q9UBX3 287 aaPredicted RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 MTFP1Q9UDX5 166 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 ELF5Q9UKW6 265 aaPredicted RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 MGAT4AQ9UM21 535 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 PCDHB10Q9UN67 800 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 RBMX2Q9Y388 322 aaKnown RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 SPG11Q96JI7 2443 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 MEIOCA2RUB1 952 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 J3QRK9 145 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 SSX5O60225 188 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 NAPSAO96009 420 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 NPY4RP50391 375 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 GUCA2AQ02747 115 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 SRSF7Q16629 238 aaKnown RBP eCLIP8.94□□□□□ -0.98
SS18-213ENST00000579640 KRBOX4Q5JUW0 171 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 RSBN1Q5VWQ0 802 aaPredicted RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 TRIQKQ629K1 86 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 LYPD2Q6UXB3 125 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 ZNF497Q6ZNH5 498 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 MOB1BQ7L9L4 216 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 PLPPR1Q8TBJ4 325 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 GCDHQ92947 438 aaPredicted RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 BPESC1Q9GZL8 116 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 PATZ1Q9HBE1 687 aaKnown RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 IFT46Q9NQC8 304 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 TAS2R8Q9NYW2 309 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 ZNF107Q9UII5 783 aaPredicted RBP8.94□□□□□ -0.98
SS18-213ENST00000579640 ANAPC10Q9UM13 185 aa8.94□□□□□ -0.98
SS18-213ENST00000579640 A0A1B0GW55 424 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 VWC2LB2RUY7 222 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 F5H0A9 414 aaPredicted RBP8.93□□□□□ -0.98
SS18-213ENST00000579640 MT-ND4P03905 459 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 WNT2P09544 360 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 GSTT2BP0CG30 244 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 DUX4L2P0CJ85 424 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 DUX4L3P0CJ86 424 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 DUX4L4P0CJ87 422 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 DUX4L5P0CJ88 424 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 DUX4L6P0CJ89 424 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 DUX4L7P0CJ90 424 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 IL7P13232 177 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 SLC25A16P16260 332 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 RCVRNP35243 200 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 P2RX3P56373 397 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 CLEC12BQ2HXU8 276 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 C11orf91Q3C1V1 193 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 DUX4L9Q6RFH8 374 aaPredicted RBP8.93□□□□□ -0.98
SS18-213ENST00000579640 PRSS57Q6UWY2 283 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 HOGA1Q86XE5 327 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 MRPL30Q8TCC3 161 aaKnown RBP8.93□□□□□ -0.98
SS18-213ENST00000579640 DYRK2Q92630 601 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 TRIM63Q969Q1 353 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 COQ2Q96H96 371 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 PALMDQ9NP74 551 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 CTSZQ9UBR2 303 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 DUX4Q9UBX2 424 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 ARID1AO14497 2285 aa8.93□□□□□ -0.98
SS18-213ENST00000579640 DVL1O14640 695 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 ORC5O43913 435 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 UPK1BO75841 260 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 ECDO95905 644 aaPredicted RBP8.92□□□□□ -0.98
SS18-213ENST00000579640 FCGR3AP08637 254 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 CSF1P09603 554 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 SELLP14151 372 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 NDUFB7P17568 137 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 NAT1P18440 290 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 GDNFP39905 211 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 INPP1P49441 399 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 AP3S2P59780 193 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 AESQ08117 197 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 EDDM3AQ14507 147 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 BAK1Q16611 211 aa8.92□□□□□ -0.98
SS18-213ENST00000579640 RNASE12Q5GAN4 147 aaKnown RBP8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms