RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ASCC1Q8N9N2 400 aaKnown RBP13.44□□□□□ -0.26
SS18-211ENST00000578954 OR5D13Q8NGL4 314 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 PLPPR1Q8TBJ4 325 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 FCAMRQ8WWV6 532 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 DYRK2Q92630 601 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 THAP7Q9BT49 309 aaPredicted RBP13.44□□□□□ -0.26
SS18-211ENST00000578954 CHST6Q9GZX3 395 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 NCOR1P1Q9H4R4 102 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 PALMDQ9NP74 551 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 C12orf4Q9NQ89 552 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 ETAA1Q9NY74 926 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 DUX4Q9UBX2 424 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 CELSR2Q9HCU4 2923 aa13.44□□□□□ -0.26
SS18-211ENST00000578954 CEACAM18A8MTB9 384 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 HSPB6O14558 160 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 LANCL1O43813 399 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 NAT1P18440 290 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 DNASE1P24855 282 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 ERP29P30040 261 aaKnown RBP13.43□□□□□ -0.26
SS18-211ENST00000578954 SRSF7Q16629 238 aaKnown RBP eCLIP13.43□□□□□ -0.26
SS18-211ENST00000578954 DEFB113Q30KQ7 82 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 AVPI1Q5T686 147 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 SLC35E4Q6ICL7 350 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 ZNF880Q6PDB4 577 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 LYPD2Q6UXB3 125 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 Q6ZPA2 131 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 Q6ZS49 121 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 TRAPPC6BQ86SZ2 158 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 SPICQ8N5J4 248 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 FAM216BQ8N7L0 139 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 ZNRF1Q8ND25 227 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 MRPL30Q8TCC3 161 aaKnown RBP13.43□□□□□ -0.26
SS18-211ENST00000578954 NEK7Q8TDX7 302 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 COQ2Q96H96 371 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 HDHD3Q9BSH5 251 aaPredicted RBP13.43□□□□□ -0.26
SS18-211ENST00000578954 UNC79Q9P2D8 2635 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 CTSZQ9UBR2 303 aa13.43□□□□□ -0.26
SS18-211ENST00000578954 ZNF107Q9UII5 783 aaPredicted RBP13.43□□□□□ -0.26
SS18-211ENST00000578954 NAV2Q8IVL1 2488 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 CENPEQ02224 2701 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 VWC2LB2RUY7 222 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 F5H0A9 414 aaPredicted RBP13.42□□□□□ -0.26
SS18-211ENST00000578954 H7C1Q1 480 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 TMPRSS2O15393 492 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 ADAM20O43506 726 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 ORC5O43913 435 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 FCN3O75636 299 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 RBBP9O75884 186 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 FCGR3AP08637 254 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 SELLP14151 372 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 RCVRNP35243 200 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 GDNFP39905 211 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 DSCR9P59020 149 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 ACTBP60709 375 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 ACTG1P63261 375 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 IFITM3Q01628 133 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 ATXN7L3Q14CW9 347 aaPredicted RBP13.42□□□□□ -0.26
SS18-211ENST00000578954 GRK1Q15835 563 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 HOGA1Q86XE5 327 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 C10orf105Q8TEF2 133 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 ZFAND2BQ8WV99 257 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 PERPQ96FX8 193 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 KLK11Q9UBX7 282 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 MIOXQ9UGB7 285 aa13.42□□□□□ -0.26
SS18-211ENST00000578954 TMEM30CPA0ZSE6 113 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 ISPDA4D126 451 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 MT-ND4P03905 459 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 MRPS15P82914 257 aaKnown RBP13.41□□□□□ -0.26
SS18-211ENST00000578954 CARTPTQ16568 116 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 RNASE12Q5GAN4 147 aaKnown RBP13.41□□□□□ -0.26
SS18-211ENST00000578954 ZNF841Q6ZN19 808 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 MOB1BQ7L9L4 216 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 TMEM185AQ8NFB2 350 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 DEDD2Q8WXF8 326 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 FAM168AQ92567 244 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 LURAP1Q96LR2 239 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 BPESC1Q9GZL8 116 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 PATZ1Q9HBE1 687 aaKnown RBP13.41□□□□□ -0.26
SS18-211ENST00000578954 MBNL3Q9NUK0 354 aaKnown RBP13.41□□□□□ -0.26
SS18-211ENST00000578954 APCP25054 2843 aa13.41□□□□□ -0.26
SS18-211ENST00000578954 POLQO75417 2590 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 A0A1W2PQ09 198 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 ANKRD20A5PA0PJZ0 165 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 WNT2P09544 360 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 P2RX3P56373 397 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 DCTN2Q13561 401 aaKnown RBP13.4□□□□□ -0.26
SS18-211ENST00000578954 KLF9Q13886 244 aaPredicted RBP13.4□□□□□ -0.26
SS18-211ENST00000578954 TRIQKQ629K1 86 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 CLEC2AQ6UVW9 174 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 LYSMD2Q8IV50 215 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 GVQW1Q8N7I0 195 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 SNAPC3Q92966 411 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 NEIL1Q96FI4 390 aaPredicted RBP13.4□□□□□ -0.26
SS18-211ENST00000578954 PIMREGQ9BSJ6 248 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 Q9N2K0 584 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 TAS2R8Q9NYW2 309 aa13.4□□□□□ -0.26
SS18-211ENST00000578954 SLC25A10Q9UBX3 287 aaPredicted RBP13.4□□□□□ -0.26
SS18-211ENST00000578954 TACC2O95359 2948 aa13.4□□□□□ -0.27
SS18-211ENST00000578954 NBPF19A0A087WUL8 3843 aa13.39□□□□□ -0.27
SS18-211ENST00000578954 ANKRD17O75179 2603 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms