RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 SRXN1Q9BYN0 137 aa3.31□□□□□ -1.88
NUP88-213ENST00000576862 KRTAP4-3Q9BYR4 195 aa3.31□□□□□ -1.88
NUP88-213ENST00000576862 ZNF430Q9H8G1 570 aaPredicted RBP3.31□□□□□ -1.88
NUP88-213ENST00000576862 FBXO6Q9NRD1 293 aaPredicted RBP3.31□□□□□ -1.88
NUP88-213ENST00000576862 B3GNT2Q9NY97 397 aa3.31□□□□□ -1.88
NUP88-213ENST00000576862 TREM2Q9NZC2 230 aa3.31□□□□□ -1.88
NUP88-213ENST00000576862 ZNF391Q9UJN7 358 aa3.31□□□□□ -1.88
NUP88-213ENST00000576862 OR52A1Q9UKL2 312 aa3.31□□□□□ -1.88
NUP88-213ENST00000576862 NDRG2Q9UN36 371 aaKnown RBP3.31□□□□□ -1.88
NUP88-213ENST00000576862 ACOT9Q9Y305 439 aa3.31□□□□□ -1.88
NUP88-213ENST00000576862 NDUFAF1Q9Y375 327 aa3.31□□□□□ -1.88
NUP88-213ENST00000576862 RPL36Q9Y3U8 105 aaKnown RBP3.31□□□□□ -1.88
NUP88-213ENST00000576862 KIAA0100Q14667 2235 aaKnown RBP3.31□□□□□ -1.88
NUP88-213ENST00000576862 FRMPD3Q5JV73 1810 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 A0A0B4J2E0 115 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 LOC285095A0A1B0GVY8 99 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 A0A1B0GX12 115 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 ANKRD20A5PA0PJZ0 165 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 OR11H12B2RN74 326 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 C21orf140B9A014 251 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 C5orf67F2Z3F1 127 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 PSMD12O00232 456 aaPredicted RBP3.3□□□□□ -1.88
NUP88-213ENST00000576862 CCL22O00626 93 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 COPEO14579 308 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 SOX15O60248 233 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 CDC40O60508 579 aaKnown RBP eCLIP3.3□□□□□ -1.88
NUP88-213ENST00000576862 SLC16A7O60669 478 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 CCNKO75909 580 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 AQP8O94778 261 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 MPZL1O95297 269 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 C1orf105O95561 183 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 ATP6V1B2P21281 511 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 PSMA1P25786 263 aaKnown RBP3.3□□□□□ -1.88
NUP88-213ENST00000576862 CTRLP40313 264 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 STC1P52823 247 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 FGF8P55075 233 aaPredicted RBP3.3□□□□□ -1.88
NUP88-213ENST00000576862 RBX1P62877 108 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 HMGCS1Q01581 520 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 RAB40BQ12829 278 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 ZNF235Q14590 738 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 MAPK14Q16539 360 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 TRMT5Q32P41 509 aaKnown RBP3.3□□□□□ -1.88
NUP88-213ENST00000576862 KLHL12Q53G59 568 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 DMRTC1Q5HYR2 192 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 ELP2Q6IA86 826 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 FAHD2BQ6P2I3 314 aaPredicted RBP3.3□□□□□ -1.88
NUP88-213ENST00000576862 CMC1Q7Z7K0 106 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 DHFR2Q86XF0 187 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 ZNF561Q8N587 486 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 C20orf203Q8NBC4 194 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 HSD17B11Q8NBQ5 300 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 ZNF740Q8NDX6 193 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 TET1Q8NFU7 2136 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 OR11H1Q8NG94 326 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 OR10W1Q8NGF6 305 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 OR11H2Q8NH07 326 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 MRPS31Q92665 395 aaKnown RBP3.3□□□□□ -1.88
NUP88-213ENST00000576862 IL22RA2Q969J5 263 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 TBRG4Q969Z0 631 aaKnown RBP eCLIP3.3□□□□□ -1.88
NUP88-213ENST00000576862 FLYWCH2Q96CP2 140 aaKnown RBP3.3□□□□□ -1.88
NUP88-213ENST00000576862 FAHD2AQ96GK7 314 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 PPP1R2P1Q96PQ5 205 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 TSC22D3Q99576 134 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 AIF1LQ9BQI0 150 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 ARL6Q9H0F7 186 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 ZDHHC11Q9H8X9 412 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 RHOFQ9HBH0 211 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 SLCO1B3Q9NPD5 702 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 ISYNA1Q9NPH2 558 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 MCUBQ9NWR8 336 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 CCL26Q9Y258 94 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 RCL1Q9Y2P8 373 aaKnown RBP3.3□□□□□ -1.88
NUP88-213ENST00000576862 CITO14578 2027 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 MYH10P35580 1976 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 PCNTO95613 3336 aa3.3□□□□□ -1.88
NUP88-213ENST00000576862 CENPFP49454 3210 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 TRAV19A0A0A6YYK7 116 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 KIR2DL5BA0A0G2JN68 375 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 KIR2DL5BA0A0G2JPC4 375 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 A0A1B0GWB2 263 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 A0A1W2PRG6 482 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 TSPAN11A1L157 253 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 OR51F1A6NGY5 319 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 TVP23AA6NH52 213 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 ANKRD65E5RJM6 399 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 F5H768 121 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 F8W036 122 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 K7EN84 100 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 CXCR6O00574 342 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 CDIPTO14735 213 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 PFDN6O15212 129 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 CRXO43186 299 aaPredicted RBP3.29□□□□□ -1.88
NUP88-213ENST00000576862 SYNGR1O43759 233 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 PLIN3O60664 434 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 MPDU1O75352 247 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 MED6O75586 246 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 TRAPPC6AO75865 159 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 HBE1P02100 147 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 FGF1P05230 155 aa3.29□□□□□ -1.88
NUP88-213ENST00000576862 TFPTP0C1Z6 253 aa3.29□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms