RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 M0R1B8 84 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 CDIPTO14735 213 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 LYPLA1O75608 230 aaPredicted RBP4.31□□□□□ -1.72
VPS53-219ENST00000576019 SNAPINO95295 136 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 F2RP25116 425 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 PFN2P35080 140 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 FGF8P55075 233 aaPredicted RBP4.31□□□□□ -1.72
VPS53-219ENST00000576019 TAS2R19P59542 299 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 CACNG7P62955 275 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 EGFEM1PQ0D2K5 195 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 MED21Q13503 144 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 PSG5Q15238 335 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 TRAM1Q15629 374 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 TFDP3Q5H9I0 405 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 CEP85LQ5SZL2 805 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 RFLNAQ6ZTI6 216 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 LINC00173Q6ZV60 143 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 PEX26Q7Z412 305 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 MTERF4Q7Z6M4 381 aaKnown RBP4.31□□□□□ -1.72
VPS53-219ENST00000576019 DAW1Q8N136 415 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 NKAPP1Q8N9T2 125 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 OR5T1Q8NG75 326 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 OR2AE1Q8NHA4 323 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 CMTM5Q96DZ9 223 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 ZNF184Q99676 751 aaPredicted RBP4.31□□□□□ -1.72
VPS53-219ENST00000576019 EBF4Q9BQW3 602 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 OR51B5Q9H339 312 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 PTGES2Q9H7Z7 377 aa4.31□□□□□ -1.72
VPS53-219ENST00000576019 TBL2Q9Y4P3 447 aaKnown RBP4.31□□□□□ -1.72
VPS53-219ENST00000576019 TRAV39A0A0B4J263 110 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 FAM240AA0A1B0GVK7 77 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 H7C417 338 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 ZNF593O00488 134 aaPredicted RBP4.3□□□□□ -1.72
VPS53-219ENST00000576019 CDC40O60508 579 aaKnown RBP eCLIP4.3□□□□□ -1.72
VPS53-219ENST00000576019 RBBP9O75884 186 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 MPZL1O95297 269 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 LYPLA2O95372 231 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 CD8AP01732 235 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 ORM1P02763 201 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 SERPINA6P08185 405 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 OR5AL1P0C617 328 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 COX5BP10606 129 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 PPP1R2P41236 205 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 SLC25A1P53007 311 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 RHOAP61586 193 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 STX5Q13190 355 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 CLEC12BQ2HXU8 276 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 GOLGA7BQ2TAP0 167 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 PAGE3Q5JUK9 113 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 CASC10Q5T4H9 136 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 KCTD16Q68DU8 428 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 HBMQ6B0K9 141 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 NIPAL1Q6NVV3 410 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 PPP1R2P3Q6NXS1 205 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 FAM173BQ6P4H8 233 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 HSD17B13Q7Z5P4 300 aaPredicted RBP4.3□□□□□ -1.72
VPS53-219ENST00000576019 MRPL52Q86TS9 123 aaKnown RBP4.3□□□□□ -1.72
VPS53-219ENST00000576019 TMEM86AQ8N2M4 240 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 Q8N377 158 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 C2orf73Q8N5S3 287 aaPredicted RBP4.3□□□□□ -1.72
VPS53-219ENST00000576019 TMEM251Q8N6I4 163 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 OR10AD1Q8NGE0 317 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 CDS1Q92903 461 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 CPNE4Q96A23 557 aaPredicted RBP4.3□□□□□ -1.72
VPS53-219ENST00000576019 FBXO17Q96EF6 278 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 ARHGDIGQ99819 225 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 TRIM15Q9C019 465 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 NXF2Q9GZY0 626 aaKnown RBP4.3□□□□□ -1.72
VPS53-219ENST00000576019 ARV1Q9H2C2 271 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 DSN1Q9H410 356 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 PLGRKTQ9HBL7 147 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 DDIT4Q9NX09 232 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 MTFP1Q9UDX5 166 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 ZNF629Q9UEG4 869 aaPredicted RBP4.3□□□□□ -1.72
VPS53-219ENST00000576019 C3orf18Q9UK00 162 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 POLR3HQ9Y535 204 aaPredicted RBP4.3□□□□□ -1.72
VPS53-219ENST00000576019 DNAH3Q8TD57 4116 aa4.3□□□□□ -1.72
VPS53-219ENST00000576019 DSCAMO60469 2012 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 MUC2Q02817 5179 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 MALRD1Q5VYJ5 2156 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 MUC4Q99102 2169 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 STARD9Q9P2P6 4700 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 IGLV8-61A0A075B6I0 122 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 IGHV3OR16-10A0A075B7F0 116 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 KIR2DS1A0A191URI9 304 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 SLC5A10A0PJK1 596 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 ZNF233A6NK53 670 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 UBFD1O14562 309 aaKnown RBP4.29□□□□□ -1.72
VPS53-219ENST00000576019 INSIG1O15503 277 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 CTNSO60931 367 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 ATP6V1G2O95670 118 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 RAB36O95755 333 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 SEMG1P04279 462 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 HPNP05981 417 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 LIMS3P0CW19 117 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 LIMS4P0CW20 117 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 NCBP2P52298 156 aaKnown RBP eCLIP4.29□□□□□ -1.72
VPS53-219ENST00000576019 OR12D2P58182 307 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 TAS2R31P59538 309 aa4.29□□□□□ -1.72
VPS53-219ENST00000576019 PPP1CBP62140 327 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms