RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 CHRNA7P36544 502 aa12.05□□□□□ -0.48
VPS53-218ENST00000575207 SYNJ2BPP57105 145 aa12.05□□□□□ -0.48
VPS53-218ENST00000575207 CDC42P60953 191 aa12.05□□□□□ -0.48
VPS53-218ENST00000575207 CD300EQ496F6 205 aaPredicted RBP12.05□□□□□ -0.48
VPS53-218ENST00000575207 CLVS2Q5SYC1 327 aa12.05□□□□□ -0.48
VPS53-218ENST00000575207 FBXL17Q9UF56 701 aa12.05□□□□□ -0.48
VPS53-218ENST00000575207 SIRPB1O00241 398 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 HLA-DRB1P01911 266 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 CGB3P0DN86 165 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 CGB7P0DN87 165 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 SPI1P17947 270 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 BLVRAP53004 296 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 BNIP1Q12981 228 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 KLF10Q13118 480 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 ECSCRQ19T08 205 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 IFI44LQ53G44 452 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 HDXQ7Z353 690 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 ERI1Q8IV48 349 aaKnown RBP12.04□□□□□ -0.48
VPS53-218ENST00000575207 POM121L12Q8N7R1 296 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 YIPF7Q8N8F6 280 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 SLC37A3Q8NCC5 494 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 C11orf45Q8TAV5 145 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 SPACA5Q96QH8 159 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 INTS14Q96SY0 518 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 SH3GL1Q99961 368 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 CADM1Q9BY67 442 aaKnown RBP12.04□□□□□ -0.48
VPS53-218ENST00000575207 BARHL1Q9BZE3 327 aa12.04□□□□□ -0.48
VPS53-218ENST00000575207 FOXA2Q9Y261 457 aaPredicted RBP12.04□□□□□ -0.48
VPS53-218ENST00000575207 ZNF736B4DX44 427 aaPredicted RBP12.03□□□□□ -0.48
VPS53-218ENST00000575207 H2AFXP16104 143 aaPredicted RBP12.03□□□□□ -0.48
VPS53-218ENST00000575207 BLVRBP30043 206 aaPredicted RBP12.03□□□□□ -0.48
VPS53-218ENST00000575207 KIR2DS2P43631 304 aa12.03□□□□□ -0.48
VPS53-218ENST00000575207 CRIP2P52943 208 aaPredicted RBP12.03□□□□□ -0.48
VPS53-218ENST00000575207 DEFB135Q30KP9 77 aa12.03□□□□□ -0.48
VPS53-218ENST00000575207 SOHLH1Q5JUK2 328 aa12.03□□□□□ -0.48
VPS53-218ENST00000575207 TMEM42Q69YG0 159 aa12.03□□□□□ -0.48
VPS53-218ENST00000575207 PYHIN1Q6K0P9 492 aa12.03□□□□□ -0.48
VPS53-218ENST00000575207 SHFQ7M4L6 423 aa12.03□□□□□ -0.48
VPS53-218ENST00000575207 TCTEX1D1Q8N7M0 179 aa12.03□□□□□ -0.48
VPS53-218ENST00000575207 WDR89Q96FK6 387 aaPredicted RBP12.03□□□□□ -0.48
VPS53-218ENST00000575207 GPR84Q9NQS5 396 aa12.03□□□□□ -0.48
VPS53-218ENST00000575207 A0A1W2PPE3 182 aa12.02□□□□□ -0.49
VPS53-218ENST00000575207 ZNF682O95780 498 aa12.02□□□□□ -0.49
VPS53-218ENST00000575207 CLUP10909 449 aa12.02□□□□□ -0.49
VPS53-218ENST00000575207 CYLC2Q14093 348 aaPredicted RBP12.02□□□□□ -0.49
VPS53-218ENST00000575207 ZNF146Q15072 292 aa12.02□□□□□ -0.49
VPS53-218ENST00000575207 MRGPRG-AS1Q2M3A8 158 aa12.02□□□□□ -0.49
VPS53-218ENST00000575207 KRBOX4Q5JUW0 171 aa12.02□□□□□ -0.49
VPS53-218ENST00000575207 FKBP9P1Q75LS8 142 aa12.02□□□□□ -0.49
VPS53-218ENST00000575207 OR51E1Q8TCB6 317 aa12.02□□□□□ -0.49
VPS53-218ENST00000575207 FBLIM1Q8WUP2 373 aa12.02□□□□□ -0.49
VPS53-218ENST00000575207 ENPP4Q9Y6X5 453 aa12.02□□□□□ -0.49
VPS53-218ENST00000575207 FAM230AA0A1W2PPH8 454 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 DHRS3O75911 302 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 LYNP07948 512 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 CTRB1P17538 263 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 SNU13P55769 128 aaKnown RBP12.01□□□□□ -0.49
VPS53-218ENST00000575207 LINC00205P59089 165 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 TPPP2P59282 170 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 MMDQ15546 238 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 LTC4SQ16873 150 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 SPIN3Q5JUX0 258 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 LINC01590Q5TEZ4 76 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 CTRB2Q6GPI1 263 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 Q6ZR54 194 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 SLC16A12Q6ZSM3 486 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 Q8IYB0 196 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 OR8J3Q8NGG0 315 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 RTN4IP1Q8WWV3 396 aaPredicted RBP12.01□□□□□ -0.49
VPS53-218ENST00000575207 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.01□□□□□ -0.49
VPS53-218ENST00000575207 EBF4Q9BQW3 602 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 OSBPL10Q9BXB5 764 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 NMNAT2Q9BZQ4 307 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 LINC00574Q9H8X3 128 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 CALYQ9NYX4 217 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 IDI2-AS1Q9NZ38 188 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 ERGIC3Q9Y282 383 aa12.01□□□□□ -0.49
VPS53-218ENST00000575207 IGLV3-1P01715 115 aa12□□□□□ -0.49
VPS53-218ENST00000575207 IDH3AP50213 366 aa12□□□□□ -0.49
VPS53-218ENST00000575207 CRMP1Q14194 572 aa12□□□□□ -0.49
VPS53-218ENST00000575207 MOGAT2Q3SYC2 334 aa12□□□□□ -0.49
VPS53-218ENST00000575207 SLC25A26Q70HW3 274 aa12□□□□□ -0.49
VPS53-218ENST00000575207 SLC16A13Q7RTY0 426 aa12□□□□□ -0.49
VPS53-218ENST00000575207 SLC15A3Q8IY34 581 aa12□□□□□ -0.49
VPS53-218ENST00000575207 RDH10Q8IZV5 341 aa12□□□□□ -0.49
VPS53-218ENST00000575207 FAM58AQ8N1B3 248 aa12□□□□□ -0.49
VPS53-218ENST00000575207 RCN3Q96D15 328 aa12□□□□□ -0.49
VPS53-218ENST00000575207 COQ2Q96H96 371 aa12□□□□□ -0.49
VPS53-218ENST00000575207 MS4A10Q96PG2 267 aa12□□□□□ -0.49
VPS53-218ENST00000575207 TEAD3Q99594 435 aa12□□□□□ -0.49
VPS53-218ENST00000575207 CCDC28BQ9BUN5 200 aa12□□□□□ -0.49
VPS53-218ENST00000575207 ZC4H2Q9NQZ6 224 aa12□□□□□ -0.49
VPS53-218ENST00000575207 RBFOX1Q9NWB1 397 aaKnown RBP12□□□□□ -0.49
VPS53-218ENST00000575207 ACOD1A6NK06 481 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 CXCR6O00574 342 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 UBE2CO00762 179 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 ENTPD6O75354 484 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 OR2H2O95918 312 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 CSN2P05814 226 aa11.99□□□□□ -0.49
VPS53-218ENST00000575207 GLP1RP43220 463 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 202.8 ms