RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 FGF23Q9GZV9 251 aaPredicted RBP6.75□□□□□ -1.33
VPS39-213ENST00000570062 MRPL18Q9H0U6 180 aaKnown RBP6.75□□□□□ -1.33
VPS39-213ENST00000570062 RANBP3Q9H6Z4 567 aaPredicted RBP6.75□□□□□ -1.33
VPS39-213ENST00000570062 DECR2Q9NUI1 292 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 ETAA1Q9NY74 926 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 EHFQ9NZC4 300 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 KCNIP1Q9NZI2 227 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 SHPKQ9UHJ6 478 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 PCDHB10Q9UN67 800 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 C14orf166Q9Y224 244 aaKnown RBP6.75□□□□□ -1.33
VPS39-213ENST00000570062 MYO9AB2RTY4 2548 aa6.75□□□□□ -1.33
VPS39-213ENST00000570062 CFAP46Q8IYW2 2715 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 hCG_1807616A0A1W2PRN6 198 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 F5H5P2 479 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 PYCARD-AS1I3L0S3 204 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 M0QYG6 137 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 M0R233 179 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 B3GALNT1O75752 331 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 RGS11O94810 467 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 PRB1P04280 392 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 CSN2P05814 226 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 THBDP07204 575 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 OR4A8P0C604 315 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 OR4E1P0C645 316 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 PLA2G2AP14555 144 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 MUC1P15941 1255 aaPredicted RBP6.74□□□□□ -1.33
VPS39-213ENST00000570062 ERP29P30040 261 aaKnown RBP6.74□□□□□ -1.33
VPS39-213ENST00000570062 GMFBP60983 142 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 TNFAIP6P98066 277 aaPredicted RBP6.74□□□□□ -1.33
VPS39-213ENST00000570062 BSPH1Q075Z2 132 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 CBX3Q13185 183 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 LY6DQ14210 128 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 ZFP69Q49AA0 526 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 PAN3Q58A45 887 aaKnown RBP6.74□□□□□ -1.33
VPS39-213ENST00000570062 C6orf183Q5T699 404 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 SLC35E4Q6ICL7 350 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 OR52W1Q6IF63 320 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 WDR82Q6UXN9 313 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 ACP7Q6ZNF0 438 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 SLC36A1Q7Z2H8 476 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 LHFPL1Q86WI0 220 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 GAPTQ8N292 157 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 OR4S1Q8NGB4 309 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 DVL3Q92997 716 aaPredicted RBP6.74□□□□□ -1.33
VPS39-213ENST00000570062 PIK3IP1Q96FE7 263 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 HYLS1Q96M11 299 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 PHB2Q99623 299 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 DNTTIP1Q9H147 329 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 MSL2Q9HCI7 577 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 Q9N2K0 584 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 C1orf123Q9NWV4 160 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 RNF7Q9UBF6 113 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 GPR132Q9UNW8 380 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 KCNIP3Q9Y2W7 256 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 RNF115Q9Y4L5 304 aa6.74□□□□□ -1.33
VPS39-213ENST00000570062 MED12LQ86YW9 2145 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 DOCK7Q96N67 2140 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 MEIKINA0A087WXM9 373 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 TMEM30CPA0ZSE6 113 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 C17orf100A8MU93 164 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 SRRM5B3KS81 715 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 F8W735 103 aaPredicted RBP6.73□□□□□ -1.33
VPS39-213ENST00000570062 FABP7O15540 132 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 NDUFA2O43678 99 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 RHBDL1O75783 438 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 SLC22A5O76082 557 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 CLDN14O95500 239 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 FSTL3O95633 263 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 OR2H2O95918 312 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 HAND1O96004 215 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 CTSDP07339 412 aaPredicted RBP6.73□□□□□ -1.33
VPS39-213ENST00000570062 SULT1A3P0DMM9 295 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 SULT1A4P0DMN0 295 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 HLA-GP17693 338 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 GZMHP20718 246 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 EIF2B2P49770 351 aaKnown RBP6.73□□□□□ -1.33
VPS39-213ENST00000570062 RAP2BP61225 183 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 HERV-K104P61576 105 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 IL13RA1P78552 427 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 CYCSP99999 105 aaKnown RBP6.73□□□□□ -1.33
VPS39-213ENST00000570062 FGL1Q08830 312 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 ADIPOQQ15848 244 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 ALKBH6Q3KRA9 238 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 TMEM30BQ3MIR4 351 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 ATPAF1Q5TC12 328 aaPredicted RBP6.73□□□□□ -1.33
VPS39-213ENST00000570062 ADAM5Q6NVV9 412 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 Q6P435 159 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 ZNF880Q6PDB4 577 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 VHLLQ6RSH7 139 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 ZNF497Q6ZNH5 498 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 Q6ZR03 302 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 WDR86Q86TI4 376 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 C11orf53Q8IXP5 236 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 SLC38A6Q8IZM9 456 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 C12orf45Q8N5I9 185 aaPredicted RBP6.73□□□□□ -1.33
VPS39-213ENST00000570062 ZNF565Q8N9K5 539 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 CCDC71LQ8N9Z2 235 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 OR4D10Q8NGI6 311 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 OR13C8Q8NGS7 320 aa6.73□□□□□ -1.33
VPS39-213ENST00000570062 COQ8AQ8NI60 647 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms