RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 TRAV38-1A0A0B4J264 116 aa25.56■■□□□ 1.68
CTCF-203ENST00000566078 LY6HO94772 140 aa25.56■■□□□ 1.68
CTCF-203ENST00000566078 RAB3DO95716 219 aa25.56■■□□□ 1.68
CTCF-203ENST00000566078 CD74P04233 296 aa25.56■■□□□ 1.68
CTCF-203ENST00000566078 OR4K15Q8NH41 348 aa25.56■■□□□ 1.68
CTCF-203ENST00000566078 MRPL30Q8TCC3 161 aaKnown RBP25.56■■□□□ 1.68
CTCF-203ENST00000566078 TINAGL1Q9GZM7 467 aaPredicted RBP25.56■■□□□ 1.68
CTCF-203ENST00000566078 CRYBG3Q68DQ2 2970 aa25.56■■□□□ 1.68
CTCF-203ENST00000566078 FAM240BA0A1B0GVZ2 78 aa25.55■■□□□ 1.68
CTCF-203ENST00000566078 HRH1P35367 487 aa25.55■■□□□ 1.68
CTCF-203ENST00000566078 RIMS4Q9H426 269 aaPredicted RBP25.55■■□□□ 1.68
CTCF-203ENST00000566078 EDARQ9UNE0 448 aa25.55■■□□□ 1.68
CTCF-203ENST00000566078 DSCAML1Q8TD84 2053 aa25.55■■□□□ 1.68
CTCF-203ENST00000566078 IGKV1D-8A0A087WSZ0 117 aa25.55■■□□□ 1.68
CTCF-203ENST00000566078 ZNF737O75373 536 aa25.55■■□□□ 1.68
CTCF-203ENST00000566078 ZNF497Q6ZNH5 498 aa25.55■■□□□ 1.68
CTCF-203ENST00000566078 GLCCI1Q86VQ1 547 aa25.55■■□□□ 1.68
CTCF-203ENST00000566078 GAFA1Q96PS6 74 aa25.55■■□□□ 1.68
CTCF-203ENST00000566078 DLL4Q9NR61 685 aa25.55■■□□□ 1.68
CTCF-203ENST00000566078 PMP2P02689 132 aa25.54■■□□□ 1.68
CTCF-203ENST00000566078 DAOP14920 347 aa25.54■■□□□ 1.68
CTCF-203ENST00000566078 TBPP20226 339 aa25.54■■□□□ 1.68
CTCF-203ENST00000566078 COL8A1P27658 744 aa25.54■■□□□ 1.68
CTCF-203ENST00000566078 GRK1Q15835 563 aa25.54■■□□□ 1.68
CTCF-203ENST00000566078 RNASE10Q5GAN6 216 aaKnown RBP25.54■■□□□ 1.68
CTCF-203ENST00000566078 SDSLQ96GA7 329 aa25.54■■□□□ 1.68
CTCF-203ENST00000566078 SHARPINQ9H0F6 387 aa25.54■■□□□ 1.68
CTCF-203ENST00000566078 ZNF286AQ9HBT8 521 aa25.54■■□□□ 1.68
CTCF-203ENST00000566078 AKAP6Q13023 2319 aa25.54■■□□□ 1.68
CTCF-203ENST00000566078 NKX6-3A6NJ46 265 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 RP2O75695 350 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 CSN2P05814 226 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 GIFP27352 417 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 SLC6A1P30531 599 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 KCNJ3P48549 501 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 ACTBL2Q562R1 376 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 CCBE1Q6UXH8 406 aaPredicted RBP25.53■■□□□ 1.68
CTCF-203ENST00000566078 ZNF561Q8N587 486 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 ZNRF1Q8ND25 227 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 OR56B4Q8NH76 319 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 SNX22Q96L94 193 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 CCL13Q99616 98 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 ZNF665Q9H7R5 613 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 MAB21L2Q9Y586 359 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 KIAA2026Q5HYC2 2103 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 HELZ2Q9BYK8 2649 aaKnown RBP25.53■■□□□ 1.68
CTCF-203ENST00000566078 USF3Q68DE3 2245 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 DOPEY2Q9Y3R5 2298 aa25.53■■□□□ 1.68
CTCF-203ENST00000566078 TRBV6-6A0A0A6YYG2 114 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 H7C1Q1 480 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 CCR6P51684 374 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 TAS2R46P59540 309 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 MRPS11P82912 194 aaKnown RBP25.52■■□□□ 1.68
CTCF-203ENST00000566078 MEF2DQ14814 521 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 ZMYND11Q15326 602 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 CHRFAM7AQ494W8 412 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 RSBN1Q5VWQ0 802 aaPredicted RBP25.52■■□□□ 1.68
CTCF-203ENST00000566078 ZNF782Q6ZMW2 699 aaPredicted RBP25.52■■□□□ 1.68
CTCF-203ENST00000566078 ZNF788Q6ZQV5 615 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 OR5H2Q8NGV7 314 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 PPP1R35Q8TAP8 253 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 CCL19Q99731 98 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 Q9N2K0 584 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 ANXA10Q9UJ72 324 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 A0A1B0GW55 424 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 AMY2AP04746 511 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 DUX4L2P0CJ85 424 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 DUX4L3P0CJ86 424 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 DUX4L4P0CJ87 422 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 DUX4L5P0CJ88 424 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 DUX4L6P0CJ89 424 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 DUX4L7P0CJ90 424 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 ARPC4P59998 168 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 BTG1P62324 171 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 DUX4L9Q6RFH8 374 aaPredicted RBP25.52■■□□□ 1.68
CTCF-203ENST00000566078 ZNF295-AS1Q8N0V1 137 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 DPAGT1Q9H3H5 408 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 MYOZ1Q9NP98 299 aaPredicted RBP25.52■■□□□ 1.68
CTCF-203ENST00000566078 DUX4Q9UBX2 424 aa25.52■■□□□ 1.68
CTCF-203ENST00000566078 TMEM30CPA0ZSE6 113 aa25.51■■□□□ 1.67
CTCF-203ENST00000566078 OVOL3O00110 214 aa25.51■■□□□ 1.67
CTCF-203ENST00000566078 SELLP14151 372 aa25.51■■□□□ 1.67
CTCF-203ENST00000566078 AESQ08117 197 aa25.51■■□□□ 1.67
CTCF-203ENST00000566078 GAPTQ8N292 157 aa25.51■■□□□ 1.67
CTCF-203ENST00000566078 FAM216BQ8N7L0 139 aa25.51■■□□□ 1.67
CTCF-203ENST00000566078 OR5AP2Q8NGF4 316 aa25.51■■□□□ 1.67
CTCF-203ENST00000566078 CCDC107Q8WV48 283 aa25.51■■□□□ 1.67
CTCF-203ENST00000566078 COQ2Q96H96 371 aa25.51■■□□□ 1.67
CTCF-203ENST00000566078 K7N7A8 449 aa25.5■■□□□ 1.67
CTCF-203ENST00000566078 PLA1AQ53H76 456 aa25.5■■□□□ 1.67
CTCF-203ENST00000566078 SLC35E4Q6ICL7 350 aa25.5■■□□□ 1.67
CTCF-203ENST00000566078 ZNF880Q6PDB4 577 aa25.5■■□□□ 1.67
CTCF-203ENST00000566078 IGFBPL1Q8WX77 278 aa25.5■■□□□ 1.67
CTCF-203ENST00000566078 MMP28Q9H239 520 aa25.5■■□□□ 1.67
CTCF-203ENST00000566078 DISC1C4P0D8 188 aa25.49■■□□□ 1.67
CTCF-203ENST00000566078 NDUFS7O75251 213 aa25.49■■□□□ 1.67
CTCF-203ENST00000566078 TK1P04183 234 aa25.49■■□□□ 1.67
CTCF-203ENST00000566078 OR3A3P47888 321 aa25.49■■□□□ 1.67
CTCF-203ENST00000566078 EDDM3AQ14507 147 aa25.49■■□□□ 1.67
CTCF-203ENST00000566078 SRSF7Q16629 238 aaKnown RBP eCLIP25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms